PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73501-73550 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 57.1429 | 66.6667 | 50.0000 | 92.7273 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 84.0000 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | het | 50.0000 | 50.0000 | 50.0000 | 85.7143 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 81.8182 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m1_e0 | * | 63.1579 | 54.5455 | 75.0000 | 87.8788 | 6 | 5 | 6 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m1_e0 | het | 72.7273 | 66.6667 | 80.0000 | 86.8421 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 66.6667 | 66.6667 | 66.6667 | 88.4615 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e0 | * | 63.1579 | 54.5455 | 75.0000 | 90.3614 | 6 | 5 | 6 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e0 | het | 72.7273 | 66.6667 | 80.0000 | 88.0952 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 66.6667 | 66.6667 | 66.6667 | 92.3077 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | * | 63.1579 | 54.5455 | 75.0000 | 90.4762 | 6 | 5 | 6 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | het | 72.7273 | 66.6667 | 80.0000 | 88.0952 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 66.6667 | 66.6667 | 66.6667 | 92.5000 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 90.4762 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 92.3077 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 92.5926 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_siren | * | 77.8754 | 73.2558 | 83.1169 | 87.6603 | 63 | 23 | 64 | 13 | 9 | 69.2308 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | het | 81.2500 | 79.5918 | 82.9787 | 86.6856 | 39 | 10 | 39 | 8 | 5 | 62.5000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | hetalt | 66.6667 | 50.0000 | 100.0000 | 83.9286 | 8 | 8 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_siren | homalt | 76.1905 | 76.1905 | 76.1905 | 90.2326 | 16 | 5 | 16 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | * | 96.8185 | 95.7447 | 97.9167 | 93.8931 | 45 | 2 | 47 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | het | 95.9166 | 95.8333 | 96.0000 | 94.4196 | 23 | 1 | 24 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.1039 | 3 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.3372 | 19 | 0 | 20 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | * | * | 96.5813 | 95.3758 | 97.8177 | 52.8217 | 143697 | 6967 | 143523 | 3202 | 3142 | 98.1262 | |