PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73451-73500 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.3860 | 83.9286 | 84.8485 | 77.2727 | 141 | 27 | 140 | 25 | 23 | 92.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 70.8184 | 55.4286 | 98.0392 | 71.1864 | 97 | 78 | 100 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.6170 | 97.7778 | 89.7959 | 82.5000 | 44 | 1 | 44 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.7778 | 19.2308 | 50.0000 | 95.0739 | 5 | 21 | 5 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 96.8000 | 1 | 2 | 0 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 28.7770 | 17.3913 | 83.3333 | 89.0909 | 4 | 19 | 5 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.5070 | 81.0811 | 88.2353 | 75.7143 | 30 | 7 | 30 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.9091 | 93.7500 | 88.2353 | 76.0563 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 63.6364 | 53.8462 | 77.7778 | 71.8750 | 7 | 6 | 7 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 78.3784 | 8 | 0 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 80.0000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 83.3333 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | * | 57.1429 | 54.5455 | 60.0000 | 86.1111 | 6 | 5 | 6 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | het | 66.6667 | 62.5000 | 71.4286 | 82.9268 | 5 | 3 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 40.0000 | 50.0000 | 33.3333 | 89.6552 | 1 | 1 | 1 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | * | 70.8333 | 65.3846 | 77.2727 | 89.0000 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.4706 | 72.2222 | 81.2500 | 86.5546 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 91.4286 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | * | 70.8333 | 65.3846 | 77.2727 | 91.2698 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.4706 | 72.2222 | 81.2500 | 88.6525 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 93.6170 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | * | 70.8333 | 65.3846 | 77.2727 | 91.4062 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | het | 76.4706 | 72.2222 | 81.2500 | 88.8889 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 72.7273 | 80.0000 | 66.6667 | 93.6842 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | * | 40.0000 | 33.3333 | 50.0000 | 89.7436 | 2 | 4 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 91.3043 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 87.5000 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | * | 53.8462 | 46.6667 | 63.6364 | 89.7196 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | het | 62.5000 | 55.5556 | 71.4286 | 88.7097 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 89.1892 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | * | 53.8462 | 46.6667 | 63.6364 | 91.6031 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | het | 62.5000 | 55.5556 | 71.4286 | 89.7059 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 92.5926 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | * | 53.8462 | 46.6667 | 63.6364 | 91.7293 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | het | 62.5000 | 55.5556 | 71.4286 | 89.8551 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||