PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73401-73450 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.1515 | 85.9467 | 88.3906 | 61.9558 | 56167 | 9184 | 55976 | 7352 | 7082 | 96.3275 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.9422 | 91.6371 | 84.5336 | 63.1509 | 27931 | 2549 | 27596 | 5049 | 4851 | 96.0784 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 77.7997 | 63.9808 | 99.2322 | 42.2569 | 10688 | 6017 | 10856 | 84 | 82 | 97.6190 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 92.5136 | 96.5980 | 88.7606 | 66.4930 | 17548 | 618 | 17524 | 2219 | 2149 | 96.8454 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 89.0060 | 88.0657 | 89.9667 | 48.3054 | 32225 | 4367 | 32137 | 3584 | 3498 | 97.6004 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 89.4933 | 92.7475 | 86.4597 | 53.2254 | 14617 | 1143 | 14482 | 2268 | 2204 | 97.1781 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 83.2118 | 71.5131 | 99.4866 | 35.3667 | 7491 | 2984 | 7558 | 39 | 39 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.0148 | 97.6827 | 88.7726 | 47.1861 | 10117 | 240 | 10097 | 1277 | 1255 | 98.2772 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 52.7192 | 50.5474 | 55.0862 | 52.4074 | 1062 | 1039 | 991 | 808 | 803 | 99.3812 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 38.5511 | 68.5714 | 26.8126 | 57.5000 | 336 | 154 | 196 | 535 | 531 | 99.2523 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 47.0332 | 30.8307 | 99.1285 | 43.6118 | 386 | 866 | 455 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.2479 | 94.7075 | 55.8292 | 51.1236 | 340 | 19 | 340 | 269 | 269 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4995 | 98.0432 | 98.9602 | 56.0148 | 27707 | 553 | 27695 | 291 | 283 | 97.2509 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.5066 | 97.9670 | 99.0521 | 55.3862 | 16095 | 334 | 16093 | 154 | 147 | 95.4545 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.9377 | 87.2897 | 99.3671 | 71.9361 | 467 | 68 | 471 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7368 | 98.6632 | 98.8105 | 55.8582 | 11145 | 151 | 11131 | 134 | 133 | 99.2537 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.4864 | 63.7097 | 76.4151 | 99.9162 | 79 | 45 | 81 | 25 | 24 | 96.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.4102 | 58.6207 | 88.1356 | 99.8947 | 51 | 36 | 52 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 56.2500 | 81.8182 | 99.8908 | 9 | 7 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.8406 | 90.4762 | 55.5556 | 99.9404 | 19 | 2 | 20 | 16 | 16 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 92.9005 | 92.0300 | 93.7875 | 53.5986 | 18279 | 1583 | 18267 | 1210 | 1145 | 94.6281 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.5431 | 94.7785 | 92.3395 | 52.9259 | 10528 | 580 | 10511 | 872 | 826 | 94.7248 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.8304 | 69.7614 | 98.9490 | 45.2532 | 1871 | 811 | 1883 | 20 | 20 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.8406 | 96.8379 | 94.8635 | 56.7607 | 5880 | 192 | 5873 | 318 | 299 | 94.0252 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.5632 | 66.2900 | 68.8862 | 64.2887 | 1760 | 895 | 1738 | 785 | 746 | 95.0318 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.3834 | 85.1240 | 54.4056 | 66.7982 | 824 | 144 | 778 | 652 | 621 | 95.2454 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 57.4257 | 40.5021 | 98.6434 | 49.1124 | 484 | 711 | 509 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 84.4639 | 91.8699 | 78.1629 | 66.9151 | 452 | 40 | 451 | 126 | 119 | 94.4444 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.6117 | 94.0740 | 95.1557 | 42.5447 | 6334 | 399 | 6325 | 322 | 313 | 97.2050 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.9292 | 96.3368 | 93.5621 | 42.6632 | 3524 | 134 | 3517 | 242 | 235 | 97.1074 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.5177 | 76.8147 | 99.0264 | 30.1942 | 709 | 214 | 712 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.1297 | 97.6301 | 96.6344 | 45.5436 | 2101 | 51 | 2096 | 73 | 71 | 97.2603 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 60.5449 | 60.3604 | 60.7306 | 57.8846 | 134 | 88 | 133 | 86 | 83 | 96.5116 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0995 | 86.0000 | 35.3448 | 60.4096 | 43 | 7 | 41 | 75 | 74 | 98.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.3418 | 37.6000 | 97.9592 | 37.9747 | 47 | 78 | 48 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 87.1287 | 93.6170 | 81.4815 | 63.5135 | 44 | 3 | 44 | 10 | 8 | 80.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | * | 65.4035 | 54.7025 | 81.3093 | 79.7697 | 855 | 708 | 857 | 197 | 137 | 69.5431 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | het | 63.6557 | 48.8737 | 91.2568 | 79.7342 | 499 | 522 | 501 | 48 | 14 | 29.1667 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | hetalt | 66.6667 | 51.5152 | 94.4444 | 86.6667 | 17 | 16 | 17 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | homalt | 68.0723 | 66.6012 | 69.6099 | 79.4167 | 339 | 170 | 339 | 148 | 123 | 83.1081 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | * | 74.7799 | 65.3095 | 87.4627 | 78.8610 | 2342 | 1244 | 2344 | 336 | 264 | 78.5714 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | het | 74.2630 | 62.0134 | 92.5433 | 78.0056 | 1386 | 849 | 1390 | 112 | 68 | 60.7143 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | hetalt | 61.8722 | 45.1613 | 98.2143 | 85.2632 | 56 | 68 | 55 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | homalt | 76.5877 | 73.3496 | 80.1248 | 79.4844 | 900 | 327 | 899 | 223 | 196 | 87.8924 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | * | 75.2930 | 65.9626 | 87.6978 | 80.5947 | 2436 | 1257 | 2438 | 342 | 265 | 77.4854 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | het | 74.8173 | 62.7655 | 92.5973 | 79.8974 | 1448 | 859 | 1451 | 116 | 68 | 58.6207 | |