PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
73151-73200 / 86044 show all
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6572
99.5964
99.7181
27.1206
246810247670
0.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
99.9299
99.9300
23.7460
14261142811
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200*
93.3333
87.5000
100.0000
93.2584
71600
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
93.6709
60500
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
90.0000
11100
ltrigg-rtg2SNPtimap_l100_m0_e0*
98.7646
97.6758
99.8779
53.5389
2126550621269267
26.9231
ltrigg-rtg2SNPtimap_l100_m0_e0het
98.2231
96.6531
99.8449
50.2864
1351546813519212
9.5238
ltrigg-rtg2SNPtimap_l100_m0_e0hetalt
92.3077
85.7143
100.0000
61.2903
1221200
ltrigg-rtg2SNPtimap_l100_m0_e0homalt
99.7358
99.5369
99.9354
58.2970
773836773855
100.0000
ltrigg-rtg2SNPtimap_l100_m1_e0*
99.2402
98.6481
99.8395
53.2325
47283648472857617
22.3684
ltrigg-rtg2SNPtimap_l100_m1_e0het
98.9017
98.0395
99.7791
50.4672
2935558729358656
9.2308
ltrigg-rtg2SNPtimap_l100_m1_e0hetalt
96.4286
93.1034
100.0000
61.9718
2722700
ltrigg-rtg2SNPtimap_l100_m1_e0homalt
99.8049
99.6715
99.9386
57.1476
1790159179001111
100.0000
ltrigg-rtg2SNPtimap_l100_m2_e0*
99.2429
98.6642
99.8285
55.8705
48307654483098319
22.8916
ltrigg-rtg2SNPtimap_l100_m2_e0het
98.9081
98.0635
99.7675
53.0390
3002959330032706
8.5714
ltrigg-rtg2SNPtimap_l100_m2_e0hetalt
96.5517
93.3333
100.0000
64.5570
2822800
ltrigg-rtg2SNPtimap_l100_m2_e0homalt
99.8031
99.6778
99.9288
59.8461
1825059182491313
100.0000
ltrigg-rtg2SNPtimap_l100_m2_e1*
99.2480
98.6784
99.8242
55.9018
48831654488338619
22.0930
ltrigg-rtg2SNPtimap_l100_m2_e1het
98.9153
98.0846
99.7602
53.1134
3036759330370736
8.2192
ltrigg-rtg2SNPtimap_l100_m2_e1hetalt
96.6667
93.5484
100.0000
63.7500
2922900
ltrigg-rtg2SNPtimap_l100_m2_e1homalt
99.8051
99.6810
99.9295
59.8306
1843559184341313
100.0000
ltrigg-rtg2SNPtimap_l125_m0_e0*
98.3571
96.8735
99.8869
59.3116
1236339912363144
28.5714
ltrigg-rtg2SNPtimap_l125_m0_e0het
97.6557
95.5343
99.8735
55.0552
78943697894100
0.0000
ltrigg-rtg2SNPtimap_l125_m0_e0hetalt
85.7143
75.0000
100.0000
70.0000
62600
ltrigg-rtg2SNPtimap_l125_m0_e0homalt
99.6428
99.3765
99.9105
65.1370
446328446344
100.0000
ltrigg-rtg2SNPtimap_l125_m1_e0*
98.9923
98.1217
99.8786
58.7041
28784551287853510
28.5714
ltrigg-rtg2SNPtimap_l125_m1_e0het
98.5415
97.2791
99.8371
55.5647
1776949717770294
13.7931
ltrigg-rtg2SNPtimap_l125_m1_e0hetalt
95.6522
91.6667
100.0000
53.1915
2222200
ltrigg-rtg2SNPtimap_l125_m1_e0homalt
99.7369
99.5292
99.9454
62.9489
10993521099366
100.0000
ltrigg-rtg2SNPtimap_l125_m2_e0*
99.0101
98.1724
99.8622
61.4718
29705553297074110
24.3902
ltrigg-rtg2SNPtimap_l125_m2_e0het
98.5679
97.3564
99.8099
58.2477
1837749918379354
11.4286
ltrigg-rtg2SNPtimap_l125_m2_e0hetalt
95.6522
91.6667
100.0000
62.7119
2222200
ltrigg-rtg2SNPtimap_l125_m2_e0homalt
99.7442
99.5422
99.9470
65.7720
11306521130666
100.0000
ltrigg-rtg2SNPtimap_l125_m2_e1*
99.0186
98.1877
99.8636
61.5506
30015554300184110
24.3902
ltrigg-rtg2SNPtimap_l125_m2_e1het
98.5813
97.3804
99.8121
58.3672
1858750018589354
11.4286
ltrigg-rtg2SNPtimap_l125_m2_e1hetalt
95.6522
91.6667
100.0000
62.7119
2222200
ltrigg-rtg2SNPtimap_l125_m2_e1homalt
99.7464
99.5462
99.9474
65.8140
11406521140766
100.0000
ltrigg-rtg2SNPtimap_l150_m0_e0*
97.8455
95.9038
99.8675
65.1893
75393227538104
40.0000
ltrigg-rtg2SNPtimap_l150_m0_e0het
96.9091
94.1142
99.8751
60.5146
4797300479760
0.0000
ltrigg-rtg2SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
78.5714
30300
ltrigg-rtg2SNPtimap_l150_m0_e0homalt
99.5276
99.2032
99.8541
71.1520
273922273844
100.0000
ltrigg-rtg2SNPtimap_l150_m1_e0*
98.7324
97.6004
99.8910
62.9401
1923947319242217
33.3333
ltrigg-rtg2SNPtimap_l150_m1_e0het
98.1622
96.5077
99.8745
59.1812
1193843211940151
6.6667
ltrigg-rtg2SNPtimap_l150_m1_e0hetalt
92.8571
86.6667
100.0000
61.7647
1321300
ltrigg-rtg2SNPtimap_l150_m1_e0homalt
99.6922
99.4677
99.9178
67.8010
728839728966
100.0000
ltrigg-rtg2SNPtimap_l150_m2_e0*
98.7701
97.6843
99.8804
65.6662
2003747520041247
29.1667
ltrigg-rtg2SNPtimap_l150_m2_e0het
98.2167
96.6307
99.8556
61.9797
1244743412450181
5.5556
ltrigg-rtg2SNPtimap_l150_m2_e0hetalt
92.8571
86.6667
100.0000
69.0476
1321300