PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71951-72000 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | * | 99.1807 | 98.6394 | 99.7280 | 56.7507 | 24939 | 344 | 24934 | 68 | 5 | 7.3529 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | het | 98.8079 | 98.0299 | 99.5983 | 53.4836 | 15624 | 314 | 15620 | 63 | 2 | 3.1746 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 65.5172 | 40 | 3 | 40 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | homalt | 99.8278 | 99.7097 | 99.9461 | 61.3020 | 9275 | 27 | 9274 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | * | 98.1288 | 96.4862 | 99.8283 | 59.5773 | 6398 | 233 | 6396 | 11 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | het | 97.3350 | 95.0239 | 99.7613 | 54.4961 | 4182 | 219 | 4180 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | homalt | 99.7066 | 99.4597 | 99.9548 | 66.5911 | 2209 | 12 | 2209 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | * | 98.9355 | 98.0707 | 99.8157 | 58.1812 | 15707 | 309 | 15707 | 29 | 5 | 17.2414 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | het | 98.4494 | 97.1855 | 99.7466 | 54.4068 | 9841 | 285 | 9840 | 25 | 2 | 8.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 61.1111 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7778 | 99.6246 | 99.9315 | 63.2977 | 5838 | 22 | 5839 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | * | 98.9542 | 98.1260 | 99.7965 | 61.0321 | 16180 | 309 | 16180 | 33 | 5 | 15.1515 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | het | 98.4778 | 97.2706 | 99.7153 | 57.2310 | 10157 | 285 | 10156 | 29 | 2 | 6.8966 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | homalt | 99.7836 | 99.6344 | 99.9333 | 66.1132 | 5995 | 22 | 5996 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | * | 98.9559 | 98.1449 | 99.7803 | 61.1285 | 16348 | 309 | 16353 | 36 | 5 | 13.8889 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | het | 98.4798 | 97.2993 | 99.6893 | 57.3735 | 10268 | 285 | 10267 | 32 | 2 | 6.2500 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6378 | 99.9340 | 66.1624 | 6052 | 22 | 6058 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | * | 97.6140 | 95.5678 | 99.7497 | 64.5964 | 3989 | 185 | 3986 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | het | 96.6478 | 93.8094 | 99.6633 | 58.3385 | 2667 | 176 | 2664 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | homalt | 99.6224 | 99.3223 | 99.9242 | 72.7891 | 1319 | 9 | 1319 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | * | 98.6367 | 97.4707 | 99.8310 | 62.1132 | 10636 | 276 | 10635 | 18 | 2 | 11.1111 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | het | 97.9852 | 96.2712 | 99.7612 | 57.9109 | 6687 | 259 | 6685 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 67.2727 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | homalt | 99.7842 | 99.6199 | 99.9492 | 67.6001 | 3931 | 15 | 3932 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | * | 98.6727 | 97.5517 | 99.8198 | 64.8483 | 11077 | 278 | 11076 | 20 | 2 | 10.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | het | 98.0436 | 96.4010 | 99.7431 | 60.6061 | 6991 | 261 | 6989 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | homalt | 99.7915 | 99.6326 | 99.9509 | 70.3193 | 4068 | 15 | 4069 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | * | 98.6899 | 97.5830 | 99.8222 | 64.8925 | 11224 | 278 | 11226 | 20 | 2 | 10.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | het | 98.0696 | 96.4480 | 99.7466 | 60.6896 | 7087 | 261 | 7085 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | homalt | 99.7941 | 99.6372 | 99.9515 | 70.3259 | 4119 | 15 | 4123 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | * | 94.4251 | 89.6732 | 99.7089 | 83.7895 | 686 | 79 | 685 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | het | 92.6096 | 86.5385 | 99.5968 | 76.3020 | 495 | 77 | 494 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | homalt | 99.4792 | 98.9637 | 100.0000 | 91.0664 | 191 | 2 | 191 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | * | 96.5840 | 93.4643 | 99.9191 | 77.8524 | 2474 | 173 | 2471 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | het | 95.0732 | 90.7107 | 99.8765 | 72.2650 | 1621 | 166 | 1618 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | homalt | 99.7071 | 99.4159 | 100.0000 | 83.9646 | 851 | 5 | 851 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | * | 96.7626 | 93.8584 | 99.8522 | 79.6388 | 2705 | 177 | 2702 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | het | 95.3430 | 91.2887 | 99.7743 | 74.4189 | 1771 | 169 | 1768 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | homalt | 99.6788 | 99.3597 | 100.0000 | 85.3155 | 931 | 6 | 931 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | * | 96.8015 | 93.9300 | 99.8540 | 79.7875 | 2739 | 177 | 2736 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | het | 95.4049 | 91.3995 | 99.7774 | 74.6007 | 1796 | 169 | 1793 | 4 | 0 | 0.0000 | |