PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71651-71700 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | hetalt | 89.2857 | 80.6452 | 100.0000 | 80.8000 | 25 | 6 | 24 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | homalt | 90.3226 | 82.3529 | 100.0000 | 82.1656 | 28 | 6 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | * | 96.5517 | 96.5517 | 96.5517 | 91.9332 | 56 | 2 | 56 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | het | 96.0000 | 97.2973 | 94.7368 | 91.8630 | 36 | 1 | 36 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.6606 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6084 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | * | * | 99.4769 | 99.2395 | 99.7155 | 55.7210 | 145629 | 1116 | 145463 | 415 | 145 | 34.9398 | |
| ltrigg-rtg2 | INDEL | D1_5 | * | het | 99.5293 | 99.4473 | 99.6114 | 53.9225 | 87090 | 484 | 86889 | 339 | 71 | 20.9440 | |
| ltrigg-rtg2 | INDEL | D1_5 | * | hetalt | 97.9310 | 96.5544 | 99.3475 | 70.1886 | 9892 | 353 | 10049 | 66 | 65 | 98.4848 | |
| ltrigg-rtg2 | INDEL | D1_5 | * | homalt | 99.7038 | 99.4298 | 99.9794 | 54.3049 | 48647 | 279 | 48525 | 10 | 9 | 90.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | * | 99.1938 | 98.8812 | 99.5083 | 54.2253 | 32349 | 366 | 32179 | 159 | 100 | 62.8931 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | het | 99.3002 | 99.0946 | 99.5066 | 51.3766 | 20577 | 188 | 20368 | 101 | 44 | 43.5644 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | hetalt | 95.1803 | 94.0828 | 96.3038 | 77.4750 | 1272 | 80 | 1433 | 55 | 54 | 98.1818 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | homalt | 99.5212 | 99.0753 | 99.9711 | 52.6911 | 10500 | 98 | 10378 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | * | 97.8414 | 96.6244 | 99.0893 | 63.2729 | 11822 | 413 | 11860 | 109 | 80 | 73.3945 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | het | 97.0089 | 97.1644 | 96.8539 | 67.7653 | 1679 | 49 | 1724 | 56 | 27 | 48.2143 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | hetalt | 98.0424 | 96.5838 | 99.5458 | 62.4013 | 9867 | 349 | 9863 | 45 | 45 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | homalt | 95.9853 | 94.8454 | 97.1530 | 60.6993 | 276 | 15 | 273 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8657 | 4 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.8616 | 2 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6350 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9232 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | func_cds | * | 99.3730 | 99.3711 | 99.3750 | 31.0345 | 158 | 1 | 159 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | func_cds | het | 99.4220 | 100.0000 | 98.8506 | 36.0294 | 85 | 0 | 86 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | func_cds | homalt | 99.3197 | 98.6486 | 100.0000 | 20.6522 | 73 | 1 | 73 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.2206 | 92.5954 | 97.9989 | 55.8475 | 3689 | 295 | 3722 | 76 | 35 | 46.0526 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6465 | 93.3333 | 95.9971 | 67.9047 | 1316 | 94 | 1319 | 55 | 15 | 27.2727 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1890 | 91.6575 | 99.0035 | 38.6331 | 1670 | 152 | 1689 | 17 | 16 | 94.1176 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3714 | 93.4840 | 99.4429 | 53.4069 | 703 | 49 | 714 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9899 | 11 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.9290 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.2857 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2575 | 98.7987 | 99.7206 | 70.8721 | 63657 | 774 | 63532 | 178 | 101 | 56.7416 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3353 | 99.0372 | 99.6352 | 71.5761 | 32916 | 320 | 32773 | 120 | 43 | 35.8333 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3352 | 97.2892 | 99.4041 | 71.1873 | 9044 | 252 | 9174 | 55 | 55 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5298 | 99.0776 | 99.9861 | 69.5819 | 21697 | 202 | 21585 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2142 | 97.3128 | 99.1325 | 55.0694 | 30564 | 844 | 30624 | 268 | 105 | 39.1791 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.0316 | 97.6012 | 98.4657 | 62.5780 | 13427 | 330 | 13413 | 209 | 47 | 22.4880 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.8712 | 96.3728 | 99.4169 | 41.9419 | 8954 | 337 | 9036 | 53 | 52 | 98.1132 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8942 | 97.8828 | 99.9267 | 51.0090 | 8183 | 177 | 8175 | 6 | 6 | 100.0000 | |