PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71601-71650 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 89.5652 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 88.4615 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.2655 | 92.5926 | 96.0000 | 88.3721 | 25 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 94.8682 | 95.0000 | 94.7368 | 87.3333 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.4762 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.2655 | 92.5926 | 96.0000 | 89.7959 | 25 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 94.8682 | 95.0000 | 94.7368 | 89.2045 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.6667 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.1111 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 92.5212 | 89.2857 | 96.0000 | 89.9194 | 25 | 3 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 94.8682 | 95.0000 | 94.7368 | 89.3258 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.1111 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 90.5882 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 86.4407 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 90.2597 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 92.8571 | 92.8571 | 92.8571 | 87.0370 | 13 | 1 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.1176 | 94.1176 | 94.1176 | 90.5556 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 93.7500 | 93.7500 | 93.7500 | 87.8788 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.4286 | 88.8889 | 94.1176 | 90.7609 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 93.7500 | 93.7500 | 93.7500 | 88.1481 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 85.7143 | 75.0000 | 100.0000 | 95.7746 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 80.0000 | 66.6667 | 100.0000 | 95.5556 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 88.8889 | 80.0000 | 100.0000 | 95.1220 | 4 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 96.2963 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 88.8889 | 80.0000 | 100.0000 | 95.2941 | 4 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 96.4286 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | * | 93.7214 | 88.8112 | 99.2063 | 83.9490 | 127 | 16 | 125 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | het | 96.7234 | 94.8718 | 98.6486 | 85.2883 | 74 | 4 | 73 | 1 | 0 | 0.0000 | |