PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71301-71350 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | C6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 97.3941 | 0 | 0 | 14 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 98.0198 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 97.4684 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 95.1891 | 1 | 0 | 173 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4528 | 1 | 0 | 74 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.8143 | 0 | 0 | 81 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4286 | 0 | 0 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 96.5517 | 95.1920 | 0 | 0 | 168 | 6 | 2 | 33.3333 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 96.1538 | 94.3437 | 0 | 0 | 75 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 96.0526 | 95.1868 | 0 | 0 | 73 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9743 | 0 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 95.5882 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m1_e0 | * | 95.7733 | 92.7869 | 98.9583 | 92.4330 | 283 | 22 | 285 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m1_e0 | het | 94.2599 | 90.5263 | 98.3146 | 91.6275 | 172 | 18 | 175 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5673 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m1_e0 | homalt | 98.1308 | 96.3303 | 100.0000 | 91.7518 | 105 | 4 | 105 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | * | 96.1163 | 93.3535 | 99.0476 | 93.0417 | 309 | 22 | 312 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | het | 94.8292 | 91.4286 | 98.4925 | 92.1437 | 192 | 18 | 196 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7685 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | homalt | 98.2301 | 96.5217 | 100.0000 | 92.6733 | 111 | 4 | 111 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | * | 96.1403 | 93.3934 | 99.0536 | 93.2003 | 311 | 22 | 314 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | het | 94.8545 | 91.4692 | 98.5000 | 92.3518 | 193 | 18 | 197 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7923 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 92.8205 | 112 | 4 | 112 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_siren | * | 98.2573 | 97.5304 | 98.9952 | 77.5300 | 7227 | 183 | 7192 | 73 | 11 | 15.0685 | |
| ltrigg-rtg2 | INDEL | * | map_siren | het | 98.0316 | 97.4490 | 98.6212 | 76.8583 | 4393 | 115 | 4363 | 61 | 2 | 3.2787 | |
| ltrigg-rtg2 | INDEL | * | map_siren | hetalt | 94.4986 | 90.2834 | 99.1266 | 91.2895 | 223 | 24 | 227 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | homalt | 98.9758 | 98.3427 | 99.6172 | 74.6678 | 2611 | 44 | 2602 | 10 | 7 | 70.0000 | |
| ltrigg-rtg2 | INDEL | * | segdup | * | 98.9993 | 98.7872 | 99.2123 | 93.0351 | 2525 | 31 | 2519 | 20 | 5 | 25.0000 | |
| ltrigg-rtg2 | INDEL | * | segdup | het | 98.6970 | 98.5675 | 98.8268 | 93.0098 | 1445 | 21 | 1432 | 17 | 2 | 11.7647 | |
| ltrigg-rtg2 | INDEL | * | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.7193 | 125 | 5 | 133 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdup | homalt | 99.5827 | 99.4792 | 99.6865 | 92.2340 | 955 | 5 | 954 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9964 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9938 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | * | 98.0392 | 98.6842 | 97.4026 | 50.0000 | 75 | 1 | 75 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | het | 97.5000 | 100.0000 | 95.1220 | 44.5946 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||