PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70701-70750 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | het | 93.4498 | 87.7049 | 100.0000 | 89.6190 | 107 | 15 | 109 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9950 | 3 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9394 | 60 | 0 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | * | 98.4561 | 97.7047 | 99.2192 | 76.7013 | 3448 | 81 | 3431 | 27 | 5 | 18.5185 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | het | 97.9324 | 96.8819 | 99.0059 | 74.1048 | 2206 | 71 | 2191 | 22 | 1 | 4.5455 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | hetalt | 95.1069 | 92.8571 | 97.4684 | 93.1245 | 78 | 6 | 77 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | homalt | 99.7001 | 99.6575 | 99.7427 | 77.3460 | 1164 | 4 | 1163 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | * | 99.1335 | 98.5494 | 99.7245 | 92.9129 | 1087 | 16 | 1086 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | het | 98.6884 | 97.8324 | 99.5595 | 91.9044 | 677 | 15 | 678 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 96.0426 | 51 | 1 | 52 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6879 | 359 | 0 | 356 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9916 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9847 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 30.7692 | 18 | 1 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | * | * | 98.2810 | 97.0642 | 99.5288 | 47.5098 | 25326 | 766 | 25133 | 119 | 76 | 63.8655 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | het | 99.1571 | 98.8268 | 99.4897 | 52.9280 | 11456 | 136 | 11308 | 58 | 18 | 31.0345 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | hetalt | 96.1547 | 93.1490 | 99.3609 | 40.3300 | 7614 | 560 | 7618 | 49 | 49 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | homalt | 99.3481 | 98.8935 | 99.8070 | 44.0385 | 6256 | 70 | 6207 | 12 | 9 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | * | 97.6527 | 96.5862 | 98.7430 | 52.4974 | 5121 | 181 | 4949 | 63 | 48 | 76.1905 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | het | 98.5474 | 97.7564 | 99.3513 | 51.5467 | 3050 | 70 | 2910 | 19 | 5 | 26.3158 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | hetalt | 93.3550 | 91.2142 | 95.5988 | 55.5303 | 924 | 89 | 934 | 43 | 43 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | homalt | 99.0057 | 98.1180 | 99.9096 | 52.1005 | 1147 | 22 | 1105 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002compoundhet | * | 96.2411 | 93.4780 | 99.1726 | 30.6557 | 8442 | 589 | 8390 | 70 | 63 | 90.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002compoundhet | het | 96.8725 | 96.2617 | 97.4910 | 56.0860 | 824 | 32 | 816 | 21 | 15 | 71.4286 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002compoundhet | hetalt | 96.2297 | 93.1910 | 99.4731 | 25.6779 | 7596 | 555 | 7552 | 40 | 40 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002compoundhet | homalt | 80.0000 | 91.6667 | 70.9677 | 60.7595 | 22 | 2 | 22 | 9 | 8 | 88.8889 | |
| ltrigg-rtg1 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8596 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 46.8354 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 41.6667 | 28 | 1 | 28 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 52.0000 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2071 | 90.0993 | 98.7075 | 49.5392 | 3540 | 389 | 3513 | 46 | 33 | 71.7391 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.5497 | 95.4214 | 97.7049 | 66.6424 | 917 | 44 | 894 | 21 | 10 | 47.6190 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.4644 | 86.6019 | 99.1783 | 36.1223 | 2049 | 317 | 2052 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9514 | 95.3488 | 98.6087 | 46.3119 | 574 | 28 | 567 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.3636 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3079 | 97.1210 | 99.5241 | 52.9586 | 15585 | 462 | 15476 | 74 | 51 | 68.9189 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9814 | 98.5171 | 99.4501 | 63.2766 | 5514 | 83 | 5426 | 30 | 9 | 30.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1940 | 95.0822 | 99.4017 | 40.6176 | 6477 | 335 | 6480 | 39 | 39 | 100.0000 | |