PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70651-70700 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.7403 | 96.1234 | 99.4126 | 61.0480 | 5108 | 206 | 5077 | 30 | 17 | 56.6667 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2792 | 97.5341 | 99.0358 | 68.7742 | 1503 | 38 | 1438 | 14 | 3 | 21.4286 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2938 | 95.0000 | 99.7012 | 54.2527 | 2964 | 156 | 3003 | 9 | 8 | 88.8889 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.5354 | 98.1623 | 98.9114 | 65.7432 | 641 | 12 | 636 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.0384 | 94.9067 | 99.2681 | 58.6918 | 6000 | 322 | 5968 | 44 | 25 | 56.8182 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.1952 | 95.9411 | 98.4824 | 66.8225 | 1891 | 80 | 1817 | 28 | 10 | 35.7143 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6531 | 93.7323 | 99.7618 | 50.5158 | 3305 | 221 | 3350 | 8 | 7 | 87.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.2267 | 97.4545 | 99.0111 | 63.3439 | 804 | 21 | 801 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0725 | 92.1348 | 98.2036 | 67.3828 | 164 | 14 | 164 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3396 | 92.5926 | 96.1538 | 72.7273 | 75 | 6 | 75 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9825 | 86.8852 | 100.0000 | 58.9147 | 53 | 8 | 53 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 97.1503 | 12 | 3 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4498 | 99.4505 | 99.4490 | 84.0999 | 362 | 2 | 361 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | * | 97.4484 | 95.6785 | 99.2851 | 80.9823 | 1107 | 50 | 1111 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | het | 96.6680 | 94.1558 | 99.3179 | 76.7302 | 725 | 45 | 728 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 97.2010 | 12 | 3 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.3310 | 99.4624 | 99.2000 | 83.9812 | 370 | 2 | 372 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | * | 95.5142 | 92.0415 | 99.2593 | 85.2378 | 266 | 23 | 268 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | het | 93.9975 | 89.1089 | 99.4536 | 79.7790 | 180 | 22 | 182 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6207 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 89.0886 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | * | 96.8582 | 94.5607 | 99.2701 | 82.3545 | 678 | 39 | 680 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | het | 95.8130 | 92.5311 | 99.3363 | 77.5012 | 446 | 36 | 449 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.5765 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3435 | 99.5614 | 99.1266 | 85.6156 | 227 | 1 | 227 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | * | 97.0527 | 94.8886 | 99.3179 | 83.4836 | 724 | 39 | 728 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | het | 96.0834 | 92.9961 | 99.3827 | 79.1327 | 478 | 36 | 483 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.6971 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.3814 | 99.5868 | 99.1770 | 86.5150 | 241 | 1 | 241 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.0436 | 94.8586 | 99.3316 | 83.4403 | 738 | 40 | 743 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | het | 96.0425 | 92.9119 | 99.3915 | 79.1102 | 485 | 37 | 490 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 98.4076 | 6 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.3980 | 99.5968 | 99.2000 | 86.4352 | 247 | 1 | 248 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | * | 94.2529 | 89.1304 | 100.0000 | 95.2596 | 41 | 5 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | het | 91.8033 | 84.8485 | 100.0000 | 92.3483 | 28 | 5 | 29 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.9194 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m1_e0 | * | 95.4128 | 91.2281 | 100.0000 | 91.6132 | 156 | 15 | 157 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m1_e0 | het | 92.7536 | 86.4865 | 100.0000 | 88.6179 | 96 | 15 | 98 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8235 | 3 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.2224 | 57 | 0 | 57 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | * | 95.7507 | 91.8478 | 100.0000 | 92.2161 | 169 | 15 | 170 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | het | 93.3921 | 87.6033 | 100.0000 | 89.4839 | 106 | 15 | 108 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9691 | 3 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.7695 | 60 | 0 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | * | 95.7746 | 91.8919 | 100.0000 | 92.3627 | 170 | 15 | 171 | 0 | 0 | ||