PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68051-68100 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 93.3333 | 3 | 4 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | * | 53.6585 | 44.0000 | 68.7500 | 95.0156 | 11 | 14 | 11 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | het | 57.1429 | 53.3333 | 61.5385 | 95.0758 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 94.7368 | 3 | 4 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 53.3333 | 44.4444 | 66.6667 | 94.6429 | 12 | 15 | 12 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 55.1724 | 50.0000 | 61.5385 | 95.2727 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 91.8033 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | * | 50.0000 | 42.8571 | 60.0000 | 97.0414 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 50.0000 | 50.0000 | 50.0000 | 97.1831 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | * | 57.1429 | 50.0000 | 66.6667 | 96.8912 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | het | 60.0000 | 60.0000 | 60.0000 | 96.9697 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.4286 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 57.1429 | 50.0000 | 66.6667 | 97.0443 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 60.0000 | 60.0000 | 60.0000 | 97.1264 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.5517 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_siren | * | 66.5799 | 58.6885 | 76.9231 | 81.1897 | 179 | 126 | 180 | 54 | 53 | 98.1481 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | het | 74.0667 | 79.0210 | 69.6970 | 82.9193 | 113 | 30 | 115 | 50 | 50 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_siren | homalt | 81.7610 | 72.2222 | 94.2029 | 75.1799 | 65 | 25 | 65 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I6_15 | segdup | * | 68.0208 | 61.1429 | 76.6423 | 91.6157 | 107 | 68 | 105 | 32 | 32 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | segdup | het | 77.4194 | 86.7470 | 69.9029 | 92.0952 | 72 | 11 | 72 | 31 | 31 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | segdup | homalt | 84.2758 | 74.4681 | 97.0588 | 89.7281 | 35 | 12 | 33 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | * | 58.3333 | 53.8462 | 63.6364 | 54.1667 | 7 | 6 | 7 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | het | 70.5882 | 85.7143 | 60.0000 | 52.3810 | 6 | 1 | 6 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | * | * | 99.5004 | 99.5447 | 99.4561 | 23.3348 | 3040706 | 13908 | 3041157 | 16632 | 2670 | 16.0534 | |
| jpowers-varprowl | SNP | * | * | het | 99.3161 | 99.3290 | 99.3033 | 25.1238 | 1861010 | 12572 | 1861335 | 13059 | 459 | 3.5148 | |
| jpowers-varprowl | SNP | * | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 871 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | * | homalt | 99.8292 | 99.9606 | 99.6981 | 20.3193 | 1179696 | 465 | 1179822 | 3573 | 2211 | 61.8808 | |
| jpowers-varprowl | SNP | * | HG002complexvar | * | 99.4683 | 99.2937 | 99.6435 | 20.7160 | 749051 | 5328 | 749404 | 2681 | 1602 | 59.7538 | |
| jpowers-varprowl | SNP | * | HG002complexvar | het | 99.3948 | 98.9553 | 99.8382 | 20.0313 | 460632 | 4863 | 460862 | 747 | 150 | 20.0803 | |
| jpowers-varprowl | SNP | * | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 310 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | HG002complexvar | homalt | 99.6393 | 99.9463 | 99.3342 | 21.7803 | 288419 | 155 | 288542 | 1934 | 1452 | 75.0776 | |