PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67801-67850 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.8805 | 11.8959 | 60.4651 | 91.9021 | 32 | 237 | 26 | 17 | 11 | 64.7059 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.9301 | 58.8235 | 86.2069 | 92.6952 | 30 | 21 | 25 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.4608 | 0.0000 | 0.0000 | 1 | 216 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 13.3333 | 100.0000 | 7.1429 | 89.5522 | 1 | 0 | 1 | 13 | 10 | 76.9231 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 75.2854 | 64.8571 | 89.7098 | 61.7172 | 681 | 369 | 680 | 78 | 71 | 91.0256 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.0964 | 94.2553 | 88.1423 | 65.1755 | 443 | 27 | 446 | 60 | 58 | 96.6667 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.2780 | 0.0000 | 0.0000 | 4 | 309 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 90.1734 | 87.6404 | 92.8571 | 52.1822 | 234 | 33 | 234 | 18 | 13 | 72.2222 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.1429 | 4.0000 | 33.3333 | 86.3636 | 1 | 24 | 1 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 94.4444 | 1 | 1 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 23 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | * | 94.2615 | 92.2652 | 96.3462 | 85.0575 | 501 | 42 | 501 | 19 | 12 | 63.1579 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | het | 93.4783 | 92.3313 | 94.6541 | 88.2916 | 301 | 25 | 301 | 17 | 10 | 58.8235 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.5610 | 96.1538 | 99.0099 | 73.5602 | 200 | 8 | 200 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9404 | 91.4862 | 96.5300 | 83.1405 | 1225 | 114 | 1224 | 44 | 31 | 70.4545 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.1526 | 93.3076 | 95.0131 | 86.3196 | 725 | 52 | 724 | 38 | 26 | 68.4211 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.6562 | 96.5251 | 98.8142 | 74.0646 | 500 | 18 | 500 | 6 | 5 | 83.3333 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | * | 93.8073 | 91.3743 | 96.3735 | 84.4642 | 1250 | 118 | 1249 | 47 | 34 | 72.3404 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 93.9573 | 93.1904 | 94.7368 | 87.3601 | 739 | 54 | 738 | 41 | 29 | 70.7317 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.5191 | 96.2335 | 98.8395 | 76.2735 | 511 | 20 | 511 | 6 | 5 | 83.3333 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7786 | 91.3262 | 96.3664 | 84.5822 | 1274 | 121 | 1273 | 48 | 35 | 72.9167 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 93.9532 | 93.0864 | 94.8363 | 87.4783 | 754 | 56 | 753 | 41 | 29 | 70.7317 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.4695 | 96.2963 | 98.6717 | 76.3359 | 520 | 20 | 520 | 7 | 6 | 85.7143 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 94.3709 | 91.9355 | 96.9388 | 89.0052 | 285 | 25 | 285 | 9 | 6 | 66.6667 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 93.6170 | 91.6667 | 95.6522 | 91.4019 | 176 | 16 | 176 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.3214 | 95.6140 | 99.0909 | 79.4007 | 109 | 5 | 109 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | * | 94.3862 | 92.1687 | 96.7130 | 85.8775 | 765 | 65 | 765 | 26 | 19 | 73.0769 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 93.7500 | 92.5926 | 94.9367 | 88.7357 | 450 | 36 | 450 | 24 | 17 | 70.8333 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 17 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.8261 | 96.3303 | 99.3691 | 77.2434 | 315 | 12 | 315 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2020 | 91.9487 | 96.5686 | 87.1557 | 788 | 69 | 788 | 28 | 21 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | het | 93.6864 | 92.5553 | 94.8454 | 89.7981 | 460 | 37 | 460 | 25 | 18 | 72.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.6190 | 96.1877 | 99.0937 | 79.2996 | 328 | 13 | 328 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | * | 94.1730 | 91.9540 | 96.5018 | 87.3047 | 800 | 70 | 800 | 29 | 21 | 72.4138 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 93.6255 | 92.5197 | 94.7581 | 89.8693 | 470 | 38 | 470 | 26 | 18 | 69.2308 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.6331 | 96.2099 | 99.0991 | 79.6206 | 330 | 13 | 330 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | * | 94.7674 | 92.6136 | 97.0238 | 92.2616 | 163 | 13 | 163 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | het | 94.7368 | 93.3962 | 96.1165 | 94.1344 | 99 | 7 | 99 | 4 | 3 | 75.0000 | |