PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67501-67550 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 97.8038 | 10 | 0 | 10 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 100.0000 | 60.0000 | 96.1390 | 6 | 0 | 6 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4182 | 99.4576 | 99.3789 | 47.3459 | 6234 | 34 | 6240 | 39 | 16 | 41.0256 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3721 | 99.2620 | 99.4824 | 48.6065 | 4035 | 30 | 4036 | 21 | 4 | 19.0476 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5482 | 99.9091 | 99.1899 | 44.8772 | 2199 | 2 | 2204 | 18 | 12 | 66.6667 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3288 | 99.0403 | 97.6276 | 52.2232 | 10629 | 103 | 10658 | 259 | 68 | 26.2548 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2384 | 98.5913 | 97.8879 | 54.8387 | 6649 | 95 | 6674 | 144 | 10 | 6.9444 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4919 | 99.8244 | 97.1944 | 47.1301 | 3980 | 7 | 3984 | 115 | 58 | 50.4348 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.5440 | 91.0891 | 73.8095 | 95.7259 | 92 | 9 | 93 | 33 | 7 | 21.2121 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.1918 | 90.9091 | 75.0000 | 96.2512 | 60 | 6 | 60 | 20 | 3 | 15.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.3959 | 91.4286 | 71.7391 | 94.3489 | 32 | 3 | 33 | 13 | 4 | 30.7692 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2455 | 99.2320 | 99.2591 | 40.7060 | 3876 | 30 | 3885 | 29 | 10 | 34.4828 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1706 | 98.8297 | 99.5138 | 43.4464 | 2449 | 29 | 2456 | 12 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4087 | 100.0000 | 98.8243 | 35.3599 | 1427 | 0 | 1429 | 17 | 10 | 58.8235 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 100.0000 | 88.8889 | 97.0492 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 6 | 0 | 6 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 95.6522 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l100_m0_e0 | * | 97.4083 | 96.6745 | 98.1533 | 73.0718 | 21047 | 724 | 21048 | 396 | 147 | 37.1212 | |
| jpowers-varprowl | SNP | ti | map_l100_m0_e0 | het | 96.5732 | 95.9308 | 97.2242 | 76.0435 | 13414 | 569 | 13415 | 383 | 137 | 35.7702 | |
| jpowers-varprowl | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l100_m0_e0 | homalt | 99.0013 | 98.1863 | 99.8300 | 65.3054 | 7633 | 141 | 7633 | 13 | 10 | 76.9231 | |
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | * | 98.2270 | 97.7259 | 98.7332 | 68.5176 | 46841 | 1090 | 46843 | 601 | 190 | 31.6140 | |
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | het | 97.5455 | 97.0209 | 98.0758 | 71.2709 | 29050 | 892 | 29052 | 570 | 164 | 28.7719 | |
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 29 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | homalt | 99.4411 | 99.0590 | 99.8261 | 62.5525 | 17791 | 169 | 17791 | 31 | 26 | 83.8710 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | * | 98.2207 | 97.7472 | 98.6987 | 70.3702 | 47858 | 1103 | 47860 | 631 | 192 | 30.4279 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | het | 97.5401 | 97.0479 | 98.0373 | 72.8725 | 29718 | 904 | 29720 | 595 | 164 | 27.5630 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | homalt | 99.4381 | 99.0770 | 99.8019 | 64.9829 | 18140 | 169 | 18140 | 36 | 28 | 77.7778 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | * | 98.2264 | 97.7569 | 98.7004 | 70.3802 | 48375 | 1110 | 48377 | 637 | 193 | 30.2983 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | het | 97.5492 | 97.0640 | 98.0394 | 72.8908 | 30051 | 909 | 30053 | 601 | 165 | 27.4542 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||