PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67351-67400 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | tech_badpromoters | homalt | 98.7013 | 97.4359 | 100.0000 | 56.8182 | 38 | 1 | 38 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | het | 97.3347 | 97.1001 | 97.5704 | 74.0696 | 45538 | 1360 | 45540 | 1134 | 265 | 23.3686 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | homalt | 99.3431 | 99.0286 | 99.6597 | 66.2636 | 27526 | 270 | 27526 | 94 | 69 | 73.4043 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | * | 96.4836 | 95.9660 | 97.0068 | 80.1786 | 18603 | 782 | 18603 | 574 | 180 | 31.3589 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | het | 95.4272 | 95.2464 | 95.6088 | 82.3444 | 12062 | 602 | 12062 | 554 | 169 | 30.5054 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5610 | 97.4523 | 99.6952 | 74.0600 | 6541 | 171 | 6541 | 20 | 11 | 55.0000 | |
| jpowers-varprowl | SNP | * | map_l125_m1_e0 | * | 97.5600 | 97.1209 | 98.0031 | 75.2469 | 44022 | 1305 | 44022 | 897 | 282 | 31.4381 | |
| jpowers-varprowl | SNP | * | map_l125_m1_e0 | het | 96.6905 | 96.3687 | 97.0145 | 77.6907 | 27361 | 1031 | 27361 | 842 | 242 | 28.7411 | |
| jpowers-varprowl | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l125_m1_e0 | homalt | 99.1107 | 98.5566 | 99.6710 | 69.6349 | 16661 | 244 | 16661 | 55 | 40 | 72.7273 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | * | 97.5865 | 97.1834 | 97.9930 | 76.8491 | 45407 | 1316 | 45407 | 930 | 284 | 30.5376 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | het | 96.7249 | 96.4527 | 96.9986 | 79.0213 | 28278 | 1040 | 28278 | 875 | 244 | 27.8857 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | homalt | 99.1290 | 98.5842 | 99.6799 | 71.9156 | 17129 | 246 | 17129 | 55 | 40 | 72.7273 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | * | 97.5993 | 97.1950 | 98.0069 | 76.8922 | 45878 | 1324 | 45878 | 933 | 285 | 30.5466 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | het | 96.7434 | 96.4676 | 97.0208 | 79.0695 | 28593 | 1047 | 28593 | 878 | 245 | 27.9043 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | homalt | 99.1340 | 98.5911 | 99.6828 | 71.9295 | 17285 | 247 | 17285 | 55 | 40 | 72.7273 | |
| jpowers-varprowl | SNP | * | map_l150_m0_e0 | * | 95.7982 | 95.3125 | 96.2888 | 84.7317 | 11468 | 564 | 11468 | 442 | 141 | 31.9005 | |
| jpowers-varprowl | SNP | * | map_l150_m0_e0 | het | 94.6235 | 94.6474 | 94.5997 | 86.3683 | 7515 | 425 | 7515 | 429 | 135 | 31.4685 | |
| jpowers-varprowl | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l150_m0_e0 | homalt | 98.1502 | 96.6740 | 99.6722 | 79.8976 | 3953 | 136 | 3953 | 13 | 6 | 46.1538 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | * | 97.1070 | 96.6121 | 97.6070 | 79.3678 | 29572 | 1037 | 29572 | 725 | 231 | 31.8621 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | het | 96.1124 | 95.8014 | 96.4254 | 81.4447 | 18505 | 811 | 18505 | 686 | 205 | 29.8834 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | homalt | 98.9052 | 98.1726 | 99.6488 | 74.4202 | 11067 | 206 | 11067 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | * | 97.1685 | 96.6972 | 97.6445 | 80.6949 | 30800 | 1052 | 30800 | 743 | 232 | 31.2248 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | het | 96.1913 | 95.9023 | 96.4821 | 82.5326 | 19308 | 825 | 19308 | 704 | 206 | 29.2614 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | homalt | 98.9410 | 98.2306 | 99.6618 | 76.3825 | 11492 | 207 | 11492 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | * | 97.1814 | 96.7122 | 97.6551 | 80.7455 | 31151 | 1059 | 31151 | 748 | 233 | 31.1497 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | het | 96.2073 | 95.9191 | 96.4972 | 82.5948 | 19532 | 831 | 19532 | 709 | 207 | 29.1961 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | homalt | 98.9483 | 98.2413 | 99.6655 | 76.3898 | 11619 | 208 | 11619 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | * | 92.2045 | 93.3489 | 91.0878 | 95.0147 | 1993 | 142 | 1993 | 195 | 31 | 15.8974 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | het | 90.2202 | 92.4967 | 88.0531 | 95.2498 | 1393 | 113 | 1393 | 189 | 29 | 15.3439 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | homalt | 97.1660 | 95.3895 | 99.0099 | 94.2749 | 600 | 29 | 600 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | SNP | * | map_l250_m1_e0 | * | 94.8303 | 94.6137 | 95.0480 | 91.2876 | 6833 | 389 | 6833 | 356 | 90 | 25.2809 | |
| jpowers-varprowl | SNP | * | map_l250_m1_e0 | het | 93.2189 | 93.6698 | 92.7723 | 92.0061 | 4454 | 301 | 4454 | 347 | 85 | 24.4957 | |
| jpowers-varprowl | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l250_m1_e0 | homalt | 98.0829 | 96.5895 | 99.6231 | 89.3663 | 2379 | 84 | 2379 | 9 | 5 | 55.5556 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e0 | * | 95.0584 | 94.9017 | 95.2157 | 91.6500 | 7483 | 402 | 7483 | 376 | 93 | 24.7340 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e0 | het | 93.5184 | 94.0316 | 93.0109 | 92.2727 | 4884 | 310 | 4884 | 367 | 88 | 23.9782 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l250_m2_e0 | homalt | 98.1866 | 96.7610 | 99.6549 | 90.0329 | 2599 | 87 | 2599 | 9 | 5 | 55.5556 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e1 | * | 95.0781 | 94.9293 | 95.2273 | 91.7069 | 7582 | 405 | 7582 | 380 | 95 | 25.0000 | |