PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67301-67350 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | D16_PLUS | tech_badpromoters | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | D1_5 | * | * | 89.7951 | 87.9294 | 91.7417 | 58.6226 | 129032 | 17713 | 128909 | 11604 | 11168 | 96.2427 | |
| jpowers-varprowl | INDEL | D1_5 | * | het | 92.8158 | 97.3223 | 88.7081 | 61.6875 | 85229 | 2345 | 85221 | 10848 | 10534 | 97.1055 | |
| jpowers-varprowl | INDEL | D1_5 | * | hetalt | 0.0000 | 0.5076 | 0.0000 | 0.0000 | 52 | 10193 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | * | homalt | 93.6510 | 89.4228 | 98.2990 | 49.9719 | 43751 | 5175 | 43688 | 756 | 634 | 83.8624 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | * | 93.8573 | 92.4805 | 95.2757 | 55.2360 | 30255 | 2460 | 30130 | 1494 | 1377 | 92.1687 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | het | 95.6155 | 96.8360 | 94.4254 | 57.0236 | 20108 | 657 | 20072 | 1185 | 1127 | 95.1055 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 1.9970 | 0.0000 | 0.0000 | 27 | 1325 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | homalt | 96.2485 | 95.4897 | 97.0194 | 51.0621 | 10120 | 478 | 10058 | 309 | 250 | 80.9061 | |
| jpowers-varprowl | INDEL | D1_5 | HG002compoundhet | * | 18.0756 | 14.9571 | 22.8370 | 69.8480 | 1830 | 10405 | 1816 | 6136 | 5980 | 97.4576 | |
| jpowers-varprowl | INDEL | D1_5 | HG002compoundhet | het | 35.3608 | 87.3843 | 22.1650 | 69.9316 | 1510 | 218 | 1550 | 5443 | 5389 | 99.0079 | |
| jpowers-varprowl | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 0.4992 | 0.0000 | 0.0000 | 51 | 10165 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | HG002compoundhet | homalt | 42.6708 | 92.4399 | 27.7372 | 69.2234 | 269 | 22 | 266 | 693 | 591 | 85.2814 | |
| jpowers-varprowl | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9682 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9748 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9330 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | func_cds | * | 93.0818 | 93.0818 | 93.0818 | 35.6275 | 148 | 11 | 148 | 11 | 10 | 90.9091 | |
| jpowers-varprowl | INDEL | D1_5 | func_cds | het | 93.3333 | 98.8235 | 88.4211 | 41.7178 | 84 | 1 | 84 | 11 | 10 | 90.9091 | |
| jpowers-varprowl | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | func_cds | homalt | 92.7536 | 86.4865 | 100.0000 | 23.8095 | 64 | 10 | 64 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 39.0386 | 32.6054 | 48.6345 | 60.4703 | 1299 | 2685 | 1300 | 1373 | 1338 | 97.4508 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 54.7528 | 73.3333 | 43.6844 | 58.3973 | 1034 | 376 | 1041 | 1342 | 1318 | 98.2116 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2744 | 0.0000 | 0.0000 | 5 | 1817 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 49.8505 | 34.5745 | 89.3103 | 71.9536 | 260 | 492 | 259 | 31 | 20 | 64.5161 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.5068 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l250_m2_e0 | homalt | 97.9437 | 96.5848 | 99.3414 | 90.7971 | 905 | 32 | 905 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | * | 94.2423 | 94.5816 | 93.9053 | 92.0320 | 2758 | 158 | 2758 | 179 | 36 | 20.1117 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | het | 92.6168 | 93.8422 | 91.4229 | 92.4770 | 1844 | 121 | 1844 | 173 | 34 | 19.6532 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | homalt | 97.9636 | 96.6173 | 99.3478 | 90.8449 | 914 | 32 | 914 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | SNP | tv | map_siren | * | 98.2043 | 98.2321 | 98.1765 | 64.5026 | 45118 | 812 | 45118 | 838 | 186 | 22.1957 | |
| jpowers-varprowl | SNP | tv | map_siren | het | 97.6371 | 97.8538 | 97.4214 | 66.9739 | 27995 | 614 | 27995 | 741 | 114 | 15.3846 | |
| jpowers-varprowl | SNP | tv | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 81 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_siren | homalt | 99.3790 | 99.3213 | 99.4367 | 59.4375 | 17123 | 117 | 17123 | 97 | 72 | 74.2268 | |
| jpowers-varprowl | SNP | tv | segdup | * | 97.6941 | 99.0272 | 96.3964 | 93.1340 | 8449 | 83 | 8453 | 316 | 33 | 10.4430 | |
| jpowers-varprowl | SNP | tv | segdup | het | 96.8798 | 98.6193 | 95.2007 | 93.8679 | 5214 | 73 | 5217 | 263 | 4 | 1.5209 | |
| jpowers-varprowl | SNP | tv | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | segdup | homalt | 99.1421 | 99.9074 | 98.3886 | 91.4237 | 3235 | 3 | 3236 | 53 | 29 | 54.7170 | |
| jpowers-varprowl | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | tech_badpromoters | * | 93.9597 | 97.2222 | 90.9091 | 63.5071 | 70 | 2 | 70 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | het | 88.8889 | 96.9697 | 82.0513 | 68.2927 | 32 | 1 | 32 | 7 | 1 | 14.2857 | |