PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67051-67100 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | * | 64.1165 | 56.5317 | 74.0519 | 63.2294 | 740 | 569 | 742 | 260 | 258 | 99.2308 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | het | 71.5885 | 75.0376 | 68.4426 | 63.7803 | 499 | 166 | 501 | 231 | 229 | 99.1342 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.8955 | 0.0000 | 0.0000 | 3 | 332 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | homalt | 82.6907 | 77.0227 | 89.2593 | 61.6477 | 238 | 71 | 241 | 29 | 29 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002compoundhet | * | 1.3665 | 1.0266 | 2.0427 | 54.2286 | 22 | 2121 | 22 | 1055 | 1050 | 99.5261 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002compoundhet | het | 3.5500 | 25.5319 | 1.9076 | 52.7962 | 12 | 35 | 19 | 977 | 973 | 99.5906 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.3344 | 0.0000 | 0.0000 | 7 | 2086 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | HG002compoundhet | homalt | 7.1429 | 100.0000 | 3.7037 | 66.6667 | 3 | 0 | 3 | 78 | 77 | 98.7179 | |
| jpowers-varprowl | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | func_cds | * | 70.0000 | 58.3333 | 87.5000 | 66.6667 | 7 | 5 | 7 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | func_cds | het | 75.0000 | 66.6667 | 85.7143 | 58.8235 | 6 | 3 | 6 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 85.7143 | 1 | 1 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.0403 | 26.6990 | 50.9615 | 85.3315 | 55 | 151 | 53 | 51 | 50 | 98.0392 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 50.2457 | 51.5789 | 48.9796 | 83.9344 | 49 | 46 | 48 | 50 | 49 | 98.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.1628 | 0.0000 | 0.0000 | 1 | 85 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.2581 | 20.0000 | 83.3333 | 93.9394 | 5 | 20 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 42.4175 | 33.3041 | 58.3975 | 75.7745 | 380 | 761 | 379 | 270 | 267 | 98.8889 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 62.3309 | 69.4954 | 56.5056 | 75.4786 | 303 | 133 | 304 | 234 | 232 | 99.1453 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5146 | 0.0000 | 0.0000 | 3 | 580 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.9254 | 60.6557 | 67.5676 | 77.1134 | 74 | 48 | 75 | 36 | 35 | 97.2222 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.1230 | 32.4837 | 56.0227 | 78.9373 | 497 | 1033 | 493 | 387 | 383 | 98.9664 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 57.4755 | 62.1622 | 53.4460 | 78.1472 | 414 | 252 | 411 | 358 | 355 | 99.1620 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3035 | 0.0000 | 0.0000 | 2 | 657 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 51.4864 | 39.5122 | 73.8739 | 83.1563 | 81 | 124 | 82 | 29 | 28 | 96.5517 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 47.6809 | 39.8148 | 59.4203 | 84.0278 | 43 | 65 | 41 | 28 | 28 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 56.9052 | 57.5758 | 56.2500 | 83.0239 | 38 | 28 | 36 | 28 | 28 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 34.4828 | 20.8333 | 100.0000 | 90.9091 | 5 | 19 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 56.8695 | 48.3146 | 69.1057 | 74.5868 | 86 | 92 | 85 | 38 | 38 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 66.3507 | 66.6667 | 66.0377 | 73.7624 | 72 | 36 | 70 | 36 | 36 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 35 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 55.0459 | 40.0000 | 88.2353 | 78.7500 | 14 | 21 | 15 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 68.0618 | 59.5506 | 79.4118 | 68.0751 | 53 | 36 | 54 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 78.5047 | 79.2453 | 77.7778 | 68.2353 | 42 | 11 | 42 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.3006 | 68.7500 | 85.7143 | 67.4419 | 11 | 5 | 12 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 20.3390 | 13.7931 | 38.7097 | 86.2222 | 12 | 75 | 12 | 19 | 18 | 94.7368 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 39.6992 | 40.7407 | 38.7097 | 83.7696 | 11 | 16 | 12 | 19 | 18 | 94.7368 | |