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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
66901-66950 / 86044 show all
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
3.0303
0.0000
0.0000
132000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
88.2468
79.8834
98.5663
50.7937
2746927543
75.0000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
20.0419
16.9448
24.5243
50.5230
467228946414281427
99.9300
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
34.5038
68.9034
23.0141
48.5298
42119042314151414
99.9293
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.2342
0.0000
0.0000
41704000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
17.0622
9.6110
75.9259
78.6561
42395411313
100.0000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
50.0000
50.0000
50.0000
86.6667
11111
100.0000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
84.6154
10111
100.0000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
32.4738
29.1984
36.5769
50.5553
40259760402269746937
99.4695
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.8416
83.8718
32.4948
49.6168
3245624326867896766
99.6612
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.3515
0.0000
0.0000
257087000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
40.3286
26.9258
80.2982
58.7796
7552049754185171
92.4324
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
35.3007
32.2054
39.0543
51.0895
35697513356855685531
99.3355
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
49.4454
86.5913
34.6019
50.3848
2835439285553965373
99.5738
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.3862
0.0000
0.0000
215417000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
43.8095
30.0844
80.5650
56.8082
7131657713172158
91.8605
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
36.2353
32.7562
40.5412
52.4633
48439942483970977056
99.4223
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
50.1118
85.0427
35.5215
51.6283
3781665380469056879
99.6235
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.3485
0.0000
0.0000
257149000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
47.1967
32.7646
84.3521
58.6869
103721281035192177
92.1875
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.3847
0.0000
0.0000
318028000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
51.8358
37.1747
85.5917
62.9991
140023661396235216
91.9149
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
36.9719
33.9924
40.5239
46.0310
32156243321847234680
99.0896
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
50.2642
88.4376
35.1094
44.6429
2417316243845064477
99.3564
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.3772
0.0000
0.0000
184754000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
52.8814
39.9386
78.2347
54.0553
7801173780217203
93.5484
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
9.0082
7.4513
11.3874
43.3234
88109387677676
99.8523
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
17.9562
55.4054
10.7143
41.9355
826681675674
99.8519
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
0872000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
7.1006
3.7267
75.0000
82.6087
6155622
100.0000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
79.5890
75.9398
83.6066
81.9793
202642044039
97.5000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
86.0339
92.9032
80.1105
83.0206
144111453636
100.0000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.0000
0.0000
037000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
85.3367
78.3784
93.6508
78.1250
58165943
75.0000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
62.0650
56.1404
69.3878
99.4106
322534158
53.3333
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
67.0213
64.2857
70.0000
99.4553
271528125
41.6667
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
09000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
74.0741
83.3333
66.6667
99.0712
51633
100.0000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
52.6781
47.7624
58.7217
52.4909
17611926176412401227
98.9516
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
66.5492
86.1631
54.2091
50.6979
1426229143612131206
99.4229
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.5922
0.0000
0.0000
71175000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
54.4398
38.5882
92.3944
62.6316
3285223282721
77.7778