PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66201-66250 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | HG002compoundhet | homalt | 13.4561 | 79.1667 | 7.3529 | 47.3888 | 19 | 5 | 20 | 252 | 231 | 91.6667 | |
| jpowers-varprowl | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.9240 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| jpowers-varprowl | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.9142 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jpowers-varprowl | INDEL | D6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | D6_15 | func_cds | * | 85.3659 | 81.3953 | 89.7436 | 54.6512 | 35 | 8 | 35 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | func_cds | het | 90.0000 | 93.1034 | 87.0968 | 53.0303 | 27 | 2 | 27 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 22.1585 | 18.8343 | 26.9076 | 54.2967 | 740 | 3189 | 737 | 2002 | 1995 | 99.6503 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 36.9440 | 68.9906 | 25.2262 | 52.0434 | 663 | 298 | 669 | 1983 | 1976 | 99.6470 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2959 | 0.0000 | 0.0000 | 7 | 2359 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.2441 | 11.6279 | 78.1609 | 81.2095 | 70 | 532 | 68 | 19 | 19 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 60.0000 | 50.0000 | 75.0000 | 98.2222 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 100.0000 | 75.0000 | 97.8142 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 44.0104 | 40.4063 | 48.3203 | 59.8954 | 6484 | 9563 | 6487 | 6938 | 6879 | 99.1496 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 57.3405 | 87.8864 | 42.5514 | 59.2810 | 4919 | 678 | 4950 | 6683 | 6644 | 99.4164 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.4110 | 0.0000 | 0.0000 | 28 | 6784 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 56.6114 | 42.2485 | 85.7701 | 63.4733 | 1537 | 2101 | 1537 | 255 | 235 | 92.1569 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 40.1009 | 36.3420 | 44.7271 | 57.2051 | 6422 | 11249 | 6417 | 7930 | 7870 | 99.2434 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 53.9976 | 85.3746 | 39.4857 | 56.3279 | 4991 | 855 | 5021 | 7695 | 7654 | 99.4672 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3847 | 0.0000 | 0.0000 | 31 | 8028 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 51.8358 | 37.1747 | 85.5917 | 62.9991 | 1400 | 2366 | 1396 | 235 | 216 | 91.9149 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 67.1394 | 62.6794 | 72.2826 | 73.6011 | 131 | 78 | 133 | 51 | 50 | 98.0392 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 77.9143 | 85.8268 | 71.3376 | 72.6003 | 109 | 18 | 112 | 45 | 44 | 97.7778 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 39 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 61.7234 | 51.1628 | 77.7778 | 78.2258 | 22 | 21 | 21 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 99.0521 | 2 | 2 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8304 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 84.4600 | 82.3881 | 86.6388 | 62.5342 | 828 | 177 | 830 | 128 | 125 | 97.6562 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.3841 | 93.4028 | 82.0941 | 65.3887 | 538 | 38 | 541 | 118 | 116 | 98.3051 | |
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||