PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66001-66050 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 73.0180 | 70.7114 | 75.4801 | 45.1896 | 4761 | 1972 | 4756 | 1545 | 1527 | 98.8350 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 79.4844 | 92.6189 | 69.6125 | 45.3619 | 3388 | 270 | 3395 | 1482 | 1473 | 99.3927 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.0834 | 0.0000 | 0.0000 | 10 | 913 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.1858 | 63.3364 | 95.5758 | 44.5914 | 1363 | 789 | 1361 | 63 | 54 | 85.7143 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 15.3418 | 13.9640 | 17.0213 | 57.0776 | 31 | 191 | 32 | 156 | 154 | 98.7179 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 24.0496 | 54.0000 | 15.4696 | 54.9751 | 27 | 23 | 28 | 153 | 152 | 99.3464 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 125 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | * | 92.1981 | 91.1068 | 93.3159 | 87.0820 | 1424 | 139 | 1424 | 102 | 64 | 62.7451 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | het | 92.1663 | 93.3399 | 91.0220 | 88.6047 | 953 | 68 | 953 | 94 | 59 | 62.7660 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 33 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | homalt | 95.3441 | 92.5344 | 98.3299 | 81.7524 | 471 | 38 | 471 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | * | 91.2993 | 89.7100 | 92.9459 | 84.6574 | 3217 | 369 | 3215 | 244 | 196 | 80.3279 | |
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | het | 91.6772 | 93.4228 | 89.9957 | 86.5713 | 2088 | 147 | 2087 | 232 | 188 | 81.0345 | |
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 0.8065 | 0.0000 | 0.0000 | 1 | 123 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | homalt | 95.3105 | 91.9315 | 98.9474 | 78.3927 | 1128 | 99 | 1128 | 12 | 8 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l100_m2_e0 | * | 91.3432 | 89.7373 | 93.0076 | 85.5055 | 3314 | 379 | 3312 | 249 | 199 | 79.9197 | |
| jpowers-varprowl | INDEL | * | map_l100_m2_e0 | het | 91.6929 | 93.3247 | 90.1173 | 87.2972 | 2153 | 154 | 2152 | 236 | 191 | 80.9322 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 75.0000 | 85.7143 | 99.4332 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7416 | 1 | 1 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 78.5574 | 75.3845 | 82.0092 | 73.4719 | 48571 | 15860 | 48524 | 10645 | 10484 | 98.4876 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.3810 | 94.8490 | 75.9939 | 75.6668 | 31524 | 1712 | 31558 | 9969 | 9887 | 99.1775 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5379 | 0.0000 | 0.0000 | 50 | 9246 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.9015 | 77.6154 | 96.1682 | 66.3211 | 16997 | 4902 | 16966 | 676 | 597 | 88.3136 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 56.4553 | 51.6684 | 62.2197 | 60.5704 | 16228 | 15180 | 16207 | 9841 | 9672 | 98.2827 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 68.7607 | 88.3768 | 56.2708 | 60.0546 | 12158 | 1599 | 12195 | 9477 | 9356 | 98.7232 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.4843 | 0.0000 | 0.0000 | 45 | 9246 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 63.1364 | 48.1459 | 91.6819 | 62.9404 | 4025 | 4335 | 4012 | 364 | 316 | 86.8132 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.4358 | 82.8084 | 88.2353 | 65.4739 | 631 | 131 | 630 | 84 | 79 | 94.0476 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 89.2190 | 94.9425 | 84.1463 | 67.3090 | 413 | 22 | 414 | 78 | 75 | 96.1538 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.4493 | 0.0000 | 0.0000 | 1 | 68 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.2235 | 84.1085 | 97.2973 | 60.5684 | 217 | 41 | 216 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 70.5882 | 60.0000 | 85.7143 | 99.5484 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.9231 | 71.4286 | 83.3333 | 99.4902 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7319 | 1 | 1 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 88.8814 | 87.5486 | 90.2554 | 74.8436 | 1350 | 192 | 1343 | 145 | 136 | 93.7931 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.6782 | 96.9631 | 86.9396 | 76.4300 | 894 | 28 | 892 | 134 | 128 | 95.5224 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.3514 | 0.0000 | 0.0000 | 1 | 73 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.9123 | 83.3333 | 97.6190 | 70.4225 | 455 | 91 | 451 | 11 | 8 | 72.7273 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 90.3658 | 89.3697 | 91.3843 | 78.2572 | 950 | 113 | 944 | 89 | 83 | 93.2584 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.7361 | 97.4125 | 88.4882 | 79.5170 | 640 | 17 | 638 | 83 | 78 | 93.9759 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 2.7027 | 0.0000 | 0.0000 | 1 | 36 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.3431 | 83.7398 | 98.0769 | 74.6548 | 309 | 60 | 306 | 6 | 5 | 83.3333 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 27.2634 | 21.9826 | 35.8835 | 56.2500 | 530 | 1881 | 530 | 947 | 929 | 98.0993 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 45.1709 | 65.4521 | 34.4852 | 53.4012 | 485 | 256 | 489 | 929 | 918 | 98.8159 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2324 | 0.0000 | 0.0000 | 3 | 1288 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 19.1153 | 11.0818 | 69.4915 | 82.2823 | 42 | 337 | 41 | 18 | 11 | 61.1111 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.6486 | 1 | 0 | 1 | 0 | 0 | ||