PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65951-66000 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 41.5565 | 39.2117 | 44.1996 | 50.5594 | 14862 | 23040 | 14844 | 18740 | 18573 | 99.1089 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 53.6407 | 81.6652 | 39.9361 | 49.3327 | 11937 | 2680 | 12008 | 18060 | 17978 | 99.5460 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.6030 | 0.0000 | 0.0000 | 83 | 13681 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.5741 | 29.8498 | 80.6598 | 59.0401 | 2842 | 6679 | 2836 | 680 | 595 | 87.5000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 43.8182 | 41.5354 | 46.3666 | 49.7641 | 13288 | 18704 | 13278 | 15359 | 15221 | 99.1015 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 55.8462 | 84.1067 | 41.8008 | 48.8238 | 10531 | 1990 | 10594 | 14750 | 14683 | 99.5458 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.6033 | 0.0000 | 0.0000 | 67 | 11038 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 46.1155 | 32.1540 | 81.5062 | 55.9877 | 2690 | 5676 | 2684 | 609 | 538 | 88.3415 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 46.9190 | 44.4652 | 49.6593 | 57.4245 | 19269 | 24066 | 19242 | 19506 | 19313 | 99.0106 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 57.8916 | 83.4278 | 44.3245 | 56.1428 | 14866 | 2953 | 14940 | 18766 | 18665 | 99.4618 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.6271 | 0.0000 | 0.0000 | 88 | 13944 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 52.1726 | 37.5740 | 85.3233 | 64.3826 | 4315 | 7169 | 4302 | 740 | 648 | 87.5676 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 56.7953 | 54.2639 | 59.5745 | 64.3309 | 35462 | 29889 | 35420 | 24035 | 23631 | 98.3191 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.7543 | 0.0000 | 0.0000 | 126 | 16579 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 64.6659 | 50.7487 | 89.1009 | 66.3976 | 9219 | 8947 | 9197 | 1125 | 989 | 87.9111 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 57.8545 | 55.6351 | 60.2584 | 48.5091 | 20358 | 16234 | 20333 | 13410 | 13207 | 98.4862 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 66.9508 | 90.0254 | 53.2915 | 48.7249 | 14188 | 1572 | 14272 | 12509 | 12414 | 99.2405 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.8401 | 0.0000 | 0.0000 | 88 | 10387 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 70.1373 | 58.7236 | 87.0583 | 47.6620 | 6082 | 4275 | 6061 | 901 | 793 | 88.0133 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.1400 | 15.6592 | 18.9300 | 50.8097 | 329 | 1772 | 322 | 1379 | 1373 | 99.5649 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 25.7159 | 56.7347 | 16.6259 | 49.0343 | 278 | 212 | 272 | 1364 | 1359 | 99.6334 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0799 | 0.0000 | 0.0000 | 1 | 1251 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5849 | 13.9276 | 76.9231 | 73.7903 | 50 | 309 | 50 | 15 | 14 | 93.3333 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.4342 | 95.8599 | 97.0154 | 57.1729 | 27090 | 1170 | 27077 | 833 | 772 | 92.6771 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.4564 | 98.1618 | 96.7610 | 58.8376 | 16127 | 302 | 16132 | 540 | 515 | 95.3704 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.7477 | 0.0000 | 0.0000 | 4 | 531 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2043 | 97.0166 | 97.3928 | 54.4393 | 10959 | 337 | 10945 | 293 | 257 | 87.7133 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.4762 | 60.4839 | 73.7864 | 99.9217 | 75 | 49 | 76 | 27 | 19 | 70.3704 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.8225 | 67.8161 | 71.9512 | 99.9249 | 59 | 28 | 59 | 23 | 15 | 65.2174 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 78.4993 | 76.1905 | 80.9524 | 99.9062 | 16 | 5 | 17 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.4050 | 68.7947 | 74.2213 | 55.0266 | 13664 | 6198 | 13653 | 4742 | 4639 | 97.8279 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 77.9999 | 89.7911 | 68.9460 | 55.2115 | 9974 | 1134 | 10002 | 4505 | 4444 | 98.6459 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.3050 | 0.0000 | 0.0000 | 35 | 2647 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.3622 | 60.1943 | 93.9043 | 54.3233 | 3655 | 2417 | 3651 | 237 | 195 | 82.2785 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 25.8333 | 23.3145 | 28.9623 | 64.4415 | 619 | 2036 | 614 | 1506 | 1481 | 98.3400 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 38.6951 | 60.3306 | 28.4813 | 61.2448 | 584 | 384 | 587 | 1474 | 1454 | 98.6431 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.5858 | 0.0000 | 0.0000 | 7 | 1188 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 10.1232 | 5.6911 | 45.7627 | 90.8385 | 28 | 464 | 27 | 32 | 27 | 84.3750 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||