PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65901-65950 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | HG002compoundhet | * | 14.0649 | 13.8284 | 14.3095 | 60.1145 | 4143 | 25817 | 4126 | 24708 | 24326 | 98.4539 | |
| jpowers-varprowl | INDEL | * | HG002compoundhet | het | 23.2624 | 81.2408 | 13.5747 | 59.7974 | 3326 | 768 | 3502 | 22296 | 22169 | 99.4304 | |
| jpowers-varprowl | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 0.7625 | 0.0000 | 0.0000 | 192 | 24988 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | HG002compoundhet | homalt | 33.5403 | 91.1079 | 20.5534 | 62.6200 | 625 | 61 | 624 | 2412 | 2157 | 89.4279 | |
| jpowers-varprowl | INDEL | * | decoy | * | 84.2105 | 80.0000 | 88.8889 | 99.9574 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | decoy | het | 83.3333 | 83.3333 | 83.3333 | 99.9657 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9173 | 3 | 0 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | func_cds | * | 91.7808 | 90.3371 | 93.2715 | 40.6336 | 402 | 43 | 402 | 29 | 28 | 96.5517 | |
| jpowers-varprowl | INDEL | * | func_cds | het | 90.4977 | 93.4579 | 87.7193 | 46.9767 | 200 | 14 | 200 | 28 | 27 | 96.4286 | |
| jpowers-varprowl | INDEL | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | func_cds | homalt | 94.1725 | 89.3805 | 99.5074 | 31.4189 | 202 | 24 | 202 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.7027 | 35.8682 | 42.0236 | 64.3849 | 3613 | 6460 | 3601 | 4968 | 4896 | 98.5507 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 49.6437 | 72.3762 | 37.7781 | 62.4735 | 2924 | 1116 | 2938 | 4839 | 4790 | 98.9874 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.6015 | 0.0000 | 0.0000 | 23 | 3801 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 44.3323 | 30.1494 | 83.7121 | 76.2590 | 666 | 1543 | 663 | 129 | 106 | 82.1705 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 62.8571 | 55.0000 | 73.3333 | 99.5745 | 11 | 9 | 11 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 76.9231 | 83.3333 | 71.4286 | 99.4659 | 10 | 2 | 10 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 33.3333 | 20.0000 | 100.0000 | 99.8894 | 1 | 4 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 73.0113 | 70.9589 | 75.1858 | 71.6028 | 67020 | 27429 | 66956 | 22098 | 21721 | 98.2940 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6453 | 92.3929 | 68.4589 | 73.0930 | 44599 | 3672 | 44716 | 20602 | 20414 | 99.0875 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.9081 | 0.0000 | 0.0000 | 140 | 15277 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 81.7040 | 72.4326 | 93.6973 | 66.4963 | 22281 | 8480 | 22240 | 1496 | 1307 | 87.3663 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 56.7953 | 54.2639 | 59.5745 | 64.3309 | 35462 | 29889 | 35420 | 24035 | 23631 | 98.3191 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.7543 | 0.0000 | 0.0000 | 126 | 16579 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 64.6659 | 50.7487 | 89.1009 | 66.3976 | 9219 | 8947 | 9197 | 1125 | 989 | 87.9111 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 76.4099 | 73.8404 | 79.1646 | 73.0862 | 1592 | 564 | 1592 | 419 | 404 | 96.4200 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.5507 | 87.9777 | 74.2800 | 74.5872 | 1105 | 151 | 1109 | 384 | 374 | 97.3958 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.7964 | 0.0000 | 0.0000 | 3 | 164 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 77.3118 | 66.0300 | 93.2432 | 67.5642 | 484 | 249 | 483 | 35 | 30 | 85.7143 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.0690 | 52.9412 | 75.0000 | 99.6461 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.1905 | 80.0000 | 72.7273 | 99.5621 | 8 | 2 | 8 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.8862 | 1 | 3 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 83.4657 | 81.8519 | 85.1445 | 71.6183 | 4190 | 929 | 4184 | 730 | 709 | 97.1233 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.2358 | 92.6000 | 80.6901 | 73.5018 | 2778 | 222 | 2783 | 666 | 652 | 97.8979 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.5751 | 0.0000 | 0.0000 | 6 | 227 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 83.7845 | 74.5493 | 95.6314 | 65.9144 | 1406 | 480 | 1401 | 64 | 57 | 89.0625 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.6995 | 85.5368 | 87.8943 | 72.5250 | 3099 | 524 | 3093 | 426 | 415 | 97.4178 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 88.9148 | 94.6211 | 83.8576 | 74.5711 | 2023 | 115 | 2026 | 390 | 381 | 97.6923 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.7879 | 0.0000 | 0.0000 | 5 | 127 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 87.0684 | 79.1574 | 96.7362 | 66.6465 | 1071 | 282 | 1067 | 36 | 34 | 94.4444 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.0460 | 26.6974 | 31.8478 | 58.4515 | 1624 | 4459 | 1615 | 3456 | 3422 | 99.0162 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 41.4960 | 66.6208 | 30.1322 | 55.6999 | 1451 | 727 | 1459 | 3383 | 3363 | 99.4088 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.5876 | 0.0000 | 0.0000 | 16 | 2707 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.2306 | 13.2826 | 68.1223 | 82.0392 | 157 | 1025 | 156 | 73 | 59 | 80.8219 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.8417 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 97.3684 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |