PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65651-65700 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.5983 | 66 | 3 | 66 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.2650 | 98.9969 | 99.5345 | 87.4939 | 1283 | 13 | 1283 | 6 | 4 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1765 | 99.0599 | 99.2933 | 88.5872 | 843 | 8 | 843 | 6 | 4 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4337 | 98.8739 | 100.0000 | 84.6019 | 439 | 5 | 439 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4555 | 99.2754 | 99.6364 | 86.7438 | 1096 | 8 | 1096 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3046 | 99.1667 | 99.4429 | 87.9933 | 714 | 6 | 714 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.7382 | 99.4778 | 100.0000 | 83.4564 | 381 | 2 | 381 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5562 | 99.3991 | 99.7137 | 77.6038 | 6617 | 40 | 6617 | 19 | 5 | 26.3158 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3974 | 99.2449 | 99.5503 | 79.5805 | 4206 | 32 | 4206 | 19 | 5 | 26.3158 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8342 | 99.6690 | 100.0000 | 72.9599 | 2409 | 8 | 2409 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0878 | 99.0624 | 99.1133 | 72.7315 | 30851 | 292 | 30851 | 276 | 26 | 9.4203 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8431 | 99.0551 | 98.6319 | 76.1009 | 19394 | 185 | 19394 | 269 | 19 | 7.0632 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7711 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5044 | 99.0738 | 99.9389 | 63.8841 | 11445 | 107 | 11445 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8449 | 99.7933 | 99.8965 | 69.7243 | 4827 | 10 | 4827 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8093 | 99.7776 | 99.8411 | 72.0082 | 3141 | 7 | 3141 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.8022 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | het | 93.0233 | 100.0000 | 86.9565 | 63.4921 | 59 | 0 | 60 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.2315 | 88.9794 | 97.9104 | 67.2852 | 1639 | 203 | 1640 | 35 | 28 | 80.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.3394 | 95.0151 | 97.7011 | 78.9127 | 629 | 33 | 595 | 14 | 7 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 89.8860 | 81.7168 | 99.8700 | 38.3320 | 733 | 164 | 768 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5172 | 97.8799 | 93.2660 | 69.8477 | 277 | 6 | 277 | 20 | 20 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8605 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1341 | 96.7259 | 99.5838 | 73.0521 | 15067 | 510 | 15075 | 63 | 45 | 71.4286 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3667 | 99.1478 | 99.5866 | 78.9281 | 6050 | 52 | 6022 | 25 | 8 | 32.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0184 | 92.3880 | 99.9457 | 61.4714 | 5486 | 452 | 5522 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4228 | 99.8304 | 99.0185 | 72.8574 | 3531 | 6 | 3531 | 35 | 34 | 97.1429 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7400 | 96.1684 | 99.3638 | 68.4150 | 15461 | 616 | 15462 | 99 | 69 | 69.6970 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6890 | 98.1776 | 99.2058 | 77.1478 | 6303 | 117 | 6246 | 50 | 22 | 44.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.7952 | 91.9607 | 99.9635 | 35.1166 | 5422 | 474 | 5480 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0456 | 99.3353 | 98.7576 | 71.4856 | 3736 | 25 | 3736 | 47 | 45 | 95.7447 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3451 | 96.0317 | 98.6949 | 65.7350 | 605 | 25 | 605 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6676 | 96.8208 | 98.5294 | 69.4245 | 335 | 11 | 335 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6129 | 84.5238 | 100.0000 | 54.1935 | 71 | 13 | 71 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0050 | 99.5000 | 98.5149 | 61.3027 | 199 | 1 | 199 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8559 | 1 | 0 | 1 | 0 | 0 | ||