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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1309 1310 1311 1312 1313 1314 1315 1316 1317 ... 1720 1721 » 65601-65650 / 86044 show all
jmaeng-gatk	SNP	ti	HG002complexvar	het	99.7293	99.5044	99.9553	17.6005	313206	1560	313156	140	49	35.0000
jmaeng-gatk	SNP	ti	HG002complexvar	hetalt	97.2973	95.6522	99.0000	40.4762	198	9	198	2	2	100.0000
jmaeng-gatk	SNP	ti	HG002complexvar	homalt	99.3419	98.7072	99.9848	18.4737	190962	2501	190952	29	26	89.6552
jmaeng-gatk	SNP	ti	HG002compoundhet	*	99.3792	98.9129	99.8498	36.3432	17288	190	17288	26	22	84.6154
jmaeng-gatk	SNP	ti	HG002compoundhet	het	99.3342	98.8953	99.7771	40.7782	9400	105	9400	21	17	80.9524
jmaeng-gatk	SNP	ti	HG002compoundhet	hetalt	98.9529	97.9275	100.0000	22.2222	567	12	567	0	0
jmaeng-gatk	SNP	ti	HG002compoundhet	homalt	99.4701	99.0127	99.9317	30.6381	7321	73	7321	5	5	100.0000
jmaeng-gatk	SNP	ti	decoy	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	decoy	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	decoy	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	func_cds	*	99.5302	99.8912	99.1718	29.3312	13772	15	13770	115	1	0.8696
jmaeng-gatk	SNP	ti	func_cds	het	99.2988	99.9412	98.6647	33.9419	8499	5	8497	115	1	0.8696
jmaeng-gatk	SNP	ti	func_cds	hetalt	100.0000	100.0000	100.0000	61.9048	8	0	8	0	0
jmaeng-gatk	SNP	ti	func_cds	homalt	99.9051	99.8104	100.0000	20.1062	5265	10	5265	0	0
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3050	98.9840	99.6281	65.8771	3215	33	3215	12	2	16.6667
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0330	98.6660	99.4027	68.8043	1997	27	1997	12	2	16.6667
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7543	99.5098	100.0000	59.5752	1218	6	1218	0	0
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7157	99.7174	99.7139	56.2929	27880	79	27879	80	10	12.5000
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6389	99.6975	99.5803	59.3397	17797	54	17796	75	5	6.6667
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.9091	83.3333	100.0000	88.6364	5	1	5	0	0
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8563	99.7624	99.9504	49.5168	10078	24	10078	5	5	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0878	99.0624	99.1133	72.7315	30851	292	30851	276	26	9.4203
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8431	99.0551	98.6319	76.1009	19394	185	19394	269	19	7.0632
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	100.0000	100.0000	100.0000	92.7711	12	0	12	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5044	99.0738	99.9389	63.8841	11445	107	11445	7	7	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4582	99.2565	99.6607	48.9520	2937	22	2937	10	1	10.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2061	98.9623	99.4512	52.1534	1812	19	1812	10	1	10.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	42.7189	1125	3	1125	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8006	99.8255	99.7757	49.8187	4004	7	4004	9	1	11.1111
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7054	99.7642	99.6466	52.8246	2538	6	2538	9	1	11.1111
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	50.0000	1	0	1	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	43.5670	1465	1	1465	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8975	99.9180	99.8770	52.7132	2437	2	2437	3	0	0.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8418	99.8734	99.8102	55.3516	1578	2	1578	3	0	0.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	50.0000	1	0	1	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	46.9388	858	0	858	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	97.7064	96.3801	99.0698	91.1194	213	8	213	2	1	50.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	97.6744	96.7105	98.6577	91.3221	147	5	147	2	1	50.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0

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