PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65551-65600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | * | map_l150_m0_e0 | homalt | 65.4719 | 48.6916 | 99.8996 | 84.7432 | 1991 | 2098 | 1991 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | * | 80.0329 | 67.8918 | 97.4620 | 88.1625 | 20781 | 9828 | 20775 | 541 | 41 | 7.5786 | |
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | het | 84.2606 | 74.8343 | 96.4038 | 89.9614 | 14455 | 4861 | 14449 | 539 | 39 | 7.2356 | |
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.4444 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | homalt | 71.8022 | 56.0188 | 99.9683 | 79.3360 | 6315 | 4958 | 6315 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | * | 80.7195 | 68.8748 | 97.4842 | 88.8293 | 21938 | 9914 | 21932 | 566 | 41 | 7.2438 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | het | 84.8178 | 75.7016 | 96.4302 | 90.4936 | 15241 | 4892 | 15235 | 564 | 39 | 6.9149 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | homalt | 72.7253 | 57.1502 | 99.9701 | 80.8789 | 6686 | 5013 | 6686 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | * | 80.8313 | 69.0469 | 97.4662 | 88.8350 | 22240 | 9970 | 22234 | 578 | 42 | 7.2664 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | het | 84.9216 | 75.8827 | 96.4049 | 90.5037 | 15452 | 4911 | 15446 | 576 | 40 | 6.9444 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | homalt | 72.8475 | 57.3011 | 99.9705 | 80.8330 | 6777 | 5050 | 6777 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l250_m0_e0 | * | 63.1215 | 46.9789 | 96.1649 | 98.1269 | 1003 | 1132 | 1003 | 40 | 3 | 7.5000 | |
| jmaeng-gatk | SNP | * | map_l250_m0_e0 | het | 63.5159 | 47.7424 | 94.8549 | 98.4462 | 719 | 787 | 719 | 39 | 2 | 5.1282 | |
| jmaeng-gatk | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | map_l250_m0_e0 | homalt | 62.1444 | 45.1510 | 99.6491 | 95.8315 | 284 | 345 | 284 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | * | 68.9230 | 53.4340 | 97.0573 | 96.2285 | 3859 | 3363 | 3859 | 117 | 9 | 7.6923 | |
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | het | 72.0683 | 57.7077 | 95.9441 | 96.8258 | 2744 | 2011 | 2744 | 116 | 8 | 6.8966 | |
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | homalt | 62.3079 | 45.2700 | 99.9104 | 92.6564 | 1115 | 1348 | 1115 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e0 | * | 70.5188 | 55.3329 | 97.1931 | 96.2932 | 4363 | 3522 | 4363 | 126 | 10 | 7.9365 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e0 | het | 73.7629 | 59.8383 | 96.1336 | 96.8561 | 3108 | 2086 | 3108 | 125 | 9 | 7.2000 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.3243 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l250_m2_e0 | homalt | 63.6387 | 46.6865 | 99.9203 | 93.0743 | 1254 | 1432 | 1254 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | * | 70.7185 | 55.5778 | 97.1973 | 96.3060 | 4439 | 3548 | 4439 | 128 | 10 | 7.8125 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | het | 73.9537 | 60.0874 | 96.1398 | 96.8694 | 3163 | 2101 | 3163 | 127 | 9 | 7.0866 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.3243 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | homalt | 63.8458 | 46.9095 | 99.9216 | 93.0622 | 1275 | 1443 | 1275 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_siren | * | 94.0415 | 89.7742 | 98.7347 | 67.2383 | 131275 | 14953 | 131252 | 1682 | 121 | 7.1938 | |
| jmaeng-gatk | SNP | * | map_siren | het | 95.7096 | 93.4477 | 98.0837 | 71.4678 | 85029 | 5962 | 85015 | 1661 | 101 | 6.0807 | |
| jmaeng-gatk | SNP | * | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | * | map_siren | homalt | 91.1261 | 83.7262 | 99.9610 | 54.5250 | 46180 | 8976 | 46171 | 18 | 18 | 100.0000 | |
| jmaeng-gatk | SNP | * | segdup | * | 98.5236 | 99.2803 | 97.7783 | 93.6584 | 27865 | 202 | 27859 | 633 | 14 | 2.2117 | |
| jmaeng-gatk | SNP | * | segdup | het | 97.9514 | 99.4283 | 96.5177 | 95.0045 | 17218 | 99 | 17212 | 621 | 2 | 0.3221 | |
| jmaeng-gatk | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5685 | 7 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | segdup | homalt | 99.4625 | 99.0412 | 99.8873 | 88.3992 | 10640 | 103 | 10640 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 47.6351 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | * | tech_badpromoters | het | 98.0132 | 96.1039 | 100.0000 | 48.2517 | 74 | 3 | 74 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | * | * | 99.6502 | 99.4959 | 99.8049 | 21.8521 | 2074998 | 10513 | 2074939 | 4056 | 178 | 4.3886 | |
| jmaeng-gatk | SNP | ti | * | het | 99.6655 | 99.6418 | 99.6893 | 25.0371 | 1277299 | 4592 | 1277249 | 3981 | 127 | 3.1902 | |
| jmaeng-gatk | SNP | ti | * | hetalt | 98.5307 | 97.9381 | 99.1304 | 54.1467 | 570 | 12 | 570 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | ti | * | homalt | 99.6264 | 99.2642 | 99.9912 | 16.0789 | 797129 | 5909 | 797120 | 70 | 46 | 65.7143 | |
| jmaeng-gatk | SNP | ti | HG002complexvar | * | 99.5813 | 99.1995 | 99.9661 | 17.9457 | 504366 | 4070 | 504306 | 171 | 77 | 45.0292 | |