PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65201-65250 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3651 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.9362 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 99.3769 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.9637 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.9961 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.8177 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 85.5856 | 15 | 1 | 16 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | homalt | 93.0233 | 95.2381 | 90.9091 | 95.1111 | 20 | 1 | 20 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | segdup | * | 96.8421 | 97.8723 | 95.8333 | 96.5393 | 46 | 1 | 46 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | segdup | het | 95.8333 | 95.8333 | 95.8333 | 97.2125 | 23 | 1 | 23 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2028 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.7781 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | * | * | 99.2409 | 99.0383 | 99.4444 | 59.6817 | 149215 | 1449 | 149263 | 834 | 391 | 46.8825 | |
| jmaeng-gatk | INDEL | I1_5 | * | het | 99.3909 | 99.5129 | 99.2691 | 62.3588 | 78656 | 385 | 78640 | 579 | 142 | 24.5250 | |
| jmaeng-gatk | INDEL | I1_5 | * | hetalt | 95.4538 | 91.3354 | 99.9611 | 60.3706 | 10225 | 970 | 10283 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | * | homalt | 99.7149 | 99.8444 | 99.5857 | 55.4032 | 60334 | 94 | 60340 | 251 | 245 | 97.6096 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | * | 99.3649 | 98.9270 | 99.8067 | 56.9963 | 33005 | 358 | 33051 | 64 | 46 | 71.8750 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | het | 99.6695 | 99.5052 | 99.8344 | 58.2792 | 18099 | 90 | 18081 | 30 | 14 | 46.6667 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 91.9469 | 85.2839 | 99.7392 | 69.0289 | 1472 | 254 | 1530 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.8366 | 99.8959 | 99.7773 | 52.9712 | 13434 | 14 | 13440 | 30 | 28 | 93.3333 | |
| jmaeng-gatk | INDEL | I1_5 | HG002compoundhet | * | 94.6029 | 91.9877 | 97.3711 | 66.5483 | 11366 | 990 | 11371 | 307 | 304 | 99.0228 | |
| jmaeng-gatk | INDEL | I1_5 | HG002compoundhet | het | 94.2604 | 97.6471 | 91.1007 | 86.7453 | 830 | 20 | 778 | 76 | 74 | 97.3684 | |
| jmaeng-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 95.4604 | 91.3394 | 99.9708 | 56.0929 | 10209 | 968 | 10266 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002compoundhet | homalt | 73.9819 | 99.3921 | 58.9189 | 89.0727 | 327 | 2 | 327 | 228 | 227 | 99.5614 | |
| jmaeng-gatk | INDEL | I1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.5000 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.8355 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 93.1034 | 96.4286 | 90.0000 | 97.5124 | 27 | 1 | 27 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.2381 | 100.0000 | 90.9091 | 97.6319 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.8903 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.6623 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.1154 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.5469 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |