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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
64901-64950 / 86044 show all
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0502
96.4694
97.6380
53.4915
1426352214261345337
97.6812
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.3197
98.8079
95.8756
69.0152
4393534347187182
97.3262
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4722
93.5461
99.5872
27.3535
671146367552828
100.0000
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8928
99.8104
96.0474
55.7633
315963159130127
97.6923
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1803
96.5537
97.8151
57.7486
1706260917057381365
95.8005
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.5285
98.5118
96.5646
71.5859
5759875706203191
94.0887
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4782
93.6096
99.5281
29.2918
754451575923636
100.0000
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.0566
99.8141
96.3599
59.7337
375973759142138
97.1831
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.6078
97.2827
97.9351
45.4096
92012579201194187
96.3918
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
97.5546
98.8657
96.2777
63.5724
270231269010499
95.1923
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3148
95.2850
99.4329
24.6012
454722545592626
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3623
99.9488
96.8254
41.7173
1952119526462
96.8750
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
83.6527
80.4403
87.1324
45.1060
950231948140140
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
71.2447
89.8649
59.0164
73.8944
133151087575
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
86.0332
75.5734
99.8536
26.3215
65921368211
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
82.5065
98.1366
71.1712
37.2881
15831586464
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
99.0619
99.2481
98.8764
82.8296
264226431
33.3333
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.3590
100.0000
98.7261
85.0476
155015520
0.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
95.8904
94.5946
97.2222
61.2903
3523511
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.0388
7407400
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
90.9091
87.7193
94.3396
99.4917
5075030
0.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
88.6076
83.3333
94.5946
99.4061
3573520
0.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.1758
90900
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
92.3077
100.0000
85.7143
99.7745
60610
0.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.1285
98.7253
99.5351
51.6909
36404736401714
82.3529
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.3640
99.1541
99.5747
61.1334
164114163974
57.1429
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.4186
97.3773
99.4823
27.6981
115131115366
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6475
99.7647
99.5305
50.8083
848284844
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
96.4597
95.3612
97.5838
52.4639
12546112523126
83.8710
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
95.9984
96.9697
95.0464
75.6777
320103071612
75.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.3738
93.6948
99.2105
23.7713
7435075466
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
97.4490
99.4792
95.5000
46.5241
191119198
88.8889
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4204
99.1329
99.7095
36.8209
171515171654
80.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.4310
99.4310
99.4310
47.4196
699469943
75.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.1364
98.2877
100.0000
18.5552
5741057500
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7743
99.7743
99.7743
34.9486
442144211
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
97.5038
96.4789
98.5507
46.5116
137513621
50.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
93.7037
95.8333
91.6667
77.1429
2312221
50.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.8947
95.8763
100.0000
21.1864
9349300
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
40.0000
2102100
jmaeng-gatkINDELD6_15map_l100_m0_e0*
96.6184
97.0874
96.1538
91.7916
100310040
0.0000
jmaeng-gatkINDELD6_15map_l100_m0_e0het
95.9350
98.3333
93.6508
93.1522
5915940
0.0000