PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64701-64750 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.1538 | 6 | 1 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.7078 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.0060 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.6667 | 6 | 1 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 86.7925 | 85.1852 | 88.4615 | 96.5517 | 23 | 4 | 23 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 81.2500 | 81.2500 | 81.2500 | 96.9112 | 13 | 3 | 13 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.2366 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.4253 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 99.2424 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 98.7277 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 98.9437 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.7778 | 2 | 1 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 98.6577 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 98.7730 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.9798 | 2 | 1 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.7207 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 98.8304 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_siren | * | 95.2066 | 94.4262 | 96.0000 | 86.3014 | 288 | 17 | 288 | 12 | 5 | 41.6667 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | het | 93.6620 | 93.0070 | 94.3262 | 88.6473 | 133 | 10 | 133 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | hetalt | 95.6522 | 91.6667 | 100.0000 | 77.7778 | 66 | 6 | 66 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.7143 | 89 | 1 | 89 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | * | 97.4504 | 98.2857 | 96.6292 | 94.0168 | 172 | 3 | 172 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | het | 95.9064 | 98.7952 | 93.1818 | 95.3733 | 82 | 1 | 82 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.7862 | 43 | 2 | 43 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7914 | 47 | 0 | 47 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | * | * | 99.6144 | 99.4608 | 99.7686 | 23.7289 | 3038147 | 16472 | 3038001 | 7046 | 253 | 3.5907 | |
| jmaeng-gatk | SNP | * | * | het | 99.6262 | 99.6225 | 99.6299 | 27.1537 | 1866514 | 7073 | 1866391 | 6934 | 179 | 2.5815 | |
| jmaeng-gatk | SNP | * | * | hetalt | 98.6127 | 97.9334 | 99.3015 | 55.2138 | 853 | 18 | 853 | 6 | 5 | 83.3333 | |
| jmaeng-gatk | SNP | * | * | homalt | 99.5965 | 99.2051 | 99.9909 | 17.4792 | 1170780 | 9381 | 1170757 | 106 | 69 | 65.0943 | |
| jmaeng-gatk | SNP | * | HG002complexvar | * | 99.5566 | 99.1508 | 99.9656 | 19.5091 | 747975 | 6406 | 747823 | 257 | 106 | 41.2451 | |
| jmaeng-gatk | SNP | * | HG002complexvar | het | 99.7155 | 99.4778 | 99.9544 | 19.1665 | 463066 | 2431 | 462938 | 211 | 65 | 30.8057 | |
| jmaeng-gatk | SNP | * | HG002complexvar | hetalt | 97.8723 | 96.4516 | 99.3355 | 40.5138 | 299 | 11 | 299 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | * | HG002complexvar | homalt | 99.3008 | 98.6263 | 99.9845 | 20.0307 | 284610 | 3964 | 284586 | 44 | 39 | 88.6364 | |