PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64651-64700 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5192 | 99.0431 | 100.0000 | 47.9245 | 414 | 4 | 414 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 62.9283 | 120 | 2 | 119 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 23.6246 | 235 | 2 | 236 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.2424 | 59 | 0 | 59 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 71.7949 | 11 | 2 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 38.8889 | 10 | 2 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 87.5000 | 84.8485 | 90.3226 | 93.7876 | 28 | 5 | 28 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 82.3529 | 82.3529 | 82.3529 | 95.1429 | 14 | 3 | 14 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.1765 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 90.4348 | 11 | 1 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 94.6903 | 93.8596 | 95.5357 | 89.8274 | 107 | 7 | 107 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.9820 | 20 | 2 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.9273 | 32 | 1 | 32 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 94.7826 | 93.9655 | 95.6140 | 90.6404 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.6829 | 93.4426 | 91.9355 | 92.0308 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.7398 | 20 | 2 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9054 | 32 | 1 | 32 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 94.7826 | 93.9655 | 95.6140 | 90.8581 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.6829 | 93.4426 | 91.9355 | 92.2111 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.2520 | 20 | 2 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.1235 | 32 | 1 | 32 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 75.8621 | 73.3333 | 78.5714 | 96.3731 | 11 | 4 | 11 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.8085 | 6 | 3 | 6 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.0476 | 5 | 1 | 5 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 90.3846 | 88.6792 | 92.1569 | 93.5361 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 86.6667 | 86.6667 | 86.6667 | 94.3609 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.3333 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.8934 | 14 | 1 | 14 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 90.3846 | 88.6792 | 92.1569 | 94.3080 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 86.6667 | 86.6667 | 86.6667 | 95.0166 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.8551 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.7778 | 14 | 1 | 14 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 90.3846 | 88.6792 | 92.1569 | 94.4565 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 86.6667 | 86.6667 | 86.6667 | 95.1378 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.1408 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9655 | 14 | 1 | 14 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 97.5232 | 6 | 2 | 6 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 75.0000 | 60.0000 | 97.9167 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.6522 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.2675 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.6292 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |