PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64201-64250 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 4 | 0 | 5 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.7895 | 4 | 1 | 4 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.8889 | 91.9540 | 86.0215 | 94.9264 | 80 | 7 | 80 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 96.1223 | 44 | 2 | 43 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.6699 | 22 | 4 | 23 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.8485 | 93.3333 | 77.7778 | 95.3728 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.2473 | 92.2222 | 86.4583 | 95.4717 | 83 | 7 | 83 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.5762 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.1818 | 22 | 4 | 24 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 93.7500 | 78.9474 | 95.8874 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.4472 | 91.7526 | 87.2549 | 95.2909 | 89 | 8 | 89 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 89.5935 | 96.0784 | 83.9286 | 96.4602 | 49 | 2 | 47 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 77.1186 | 25 | 5 | 27 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 93.7500 | 78.9474 | 95.9227 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.4729 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.5281 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6190 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.1173 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.1831 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8610 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.7368 | 100.0000 | 90.0000 | 97.4555 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.5771 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | * | * | 99.1098 | 99.0216 | 99.1981 | 60.9184 | 341171 | 3371 | 341038 | 2757 | 1621 | 58.7958 | |
| jmaeng-gatk | INDEL | * | * | het | 99.3015 | 99.4880 | 99.1156 | 62.5254 | 193139 | 994 | 192770 | 1720 | 614 | 35.6977 | |
| jmaeng-gatk | INDEL | * | * | hetalt | 95.2835 | 91.2311 | 99.7126 | 56.1602 | 23024 | 2213 | 23247 | 67 | 66 | 98.5075 | |
| jmaeng-gatk | INDEL | * | * | homalt | 99.5485 | 99.8690 | 99.2301 | 59.0290 | 125008 | 164 | 125021 | 970 | 941 | 97.0103 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | * | 99.2404 | 98.8731 | 99.6104 | 58.2744 | 76071 | 867 | 75939 | 297 | 248 | 83.5017 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | het | 99.5676 | 99.3876 | 99.7482 | 58.0104 | 45929 | 283 | 45560 | 115 | 73 | 63.4783 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | hetalt | 91.1572 | 85.1041 | 98.1374 | 66.7119 | 3148 | 551 | 3372 | 64 | 64 | 100.0000 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | homalt | 99.7212 | 99.8779 | 99.5650 | 57.3567 | 26994 | 33 | 27007 | 118 | 111 | 94.0678 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | * | 93.6190 | 92.3632 | 94.9094 | 62.9257 | 27672 | 2288 | 27556 | 1478 | 1464 | 99.0528 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | het | 92.6044 | 97.8749 | 87.8724 | 79.5506 | 4007 | 87 | 3775 | 521 | 513 | 98.4645 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | hetalt | 95.3319 | 91.2708 | 99.7711 | 50.5352 | 22982 | 2198 | 23098 | 53 | 53 | 100.0000 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | homalt | 60.0968 | 99.5627 | 43.0372 | 84.8886 | 683 | 3 | 683 | 904 | 898 | 99.3363 | |
| jmaeng-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9727 | 10 | 0 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9809 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8525 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9340 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | func_cds | * | 97.9088 | 99.5506 | 96.3203 | 53.9841 | 443 | 2 | 445 | 17 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | func_cds | het | 95.9801 | 99.5327 | 92.6724 | 62.8205 | 213 | 1 | 215 | 17 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 50.0000 | 4 | 1 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 39.2473 | 226 | 0 | 226 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.0763 | 92.8919 | 95.2913 | 68.9761 | 9357 | 716 | 9208 | 455 | 419 | 92.0879 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.8816 | 95.9653 | 93.8220 | 79.5053 | 3877 | 163 | 3584 | 236 | 208 | 88.1356 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.3401 | 86.1140 | 99.5366 | 37.1153 | 3293 | 531 | 3437 | 16 | 16 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1076 | 99.0041 | 91.5063 | 65.9399 | 2187 | 22 | 2187 | 203 | 195 | 96.0591 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3631 | 20 | 0 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4138 | 12 | 0 | 12 | 0 | 0 | ||