PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63151-63200 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | * | map_l100_m2_e0 | hetalt | 93.2274 | 88.0000 | 99.1150 | 87.3884 | 110 | 15 | 112 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m2_e0 | homalt | 99.1284 | 99.2070 | 99.0499 | 83.3333 | 1251 | 10 | 1251 | 12 | 6 | 50.0000 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | * | 98.4239 | 98.0564 | 98.7942 | 84.0281 | 3683 | 73 | 3687 | 45 | 15 | 33.3333 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | het | 98.3311 | 98.0367 | 98.6272 | 84.1536 | 2297 | 46 | 2299 | 32 | 9 | 28.1250 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | hetalt | 92.7483 | 87.1212 | 99.1525 | 87.2294 | 115 | 17 | 117 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | homalt | 99.1420 | 99.2194 | 99.0647 | 83.4066 | 1271 | 10 | 1271 | 12 | 6 | 50.0000 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | * | 97.8989 | 97.7324 | 98.0660 | 88.3592 | 862 | 20 | 862 | 17 | 6 | 35.2941 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | het | 97.6068 | 97.2743 | 97.9417 | 88.6222 | 571 | 16 | 571 | 12 | 2 | 16.6667 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.7082 | 10 | 1 | 10 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m0_e0 | homalt | 98.5965 | 98.9437 | 98.2517 | 86.9644 | 281 | 3 | 281 | 5 | 4 | 80.0000 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | * | 98.5968 | 98.3389 | 98.8561 | 85.7695 | 2072 | 35 | 2074 | 24 | 8 | 33.3333 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | het | 98.3481 | 98.0524 | 98.6456 | 86.0194 | 1309 | 26 | 1311 | 18 | 4 | 22.2222 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 92.6078 | 36 | 4 | 36 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m1_e0 | homalt | 99.2491 | 99.3169 | 99.1814 | 84.5684 | 727 | 5 | 727 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | * | 98.5850 | 98.3151 | 98.8564 | 86.6789 | 2159 | 37 | 2161 | 25 | 8 | 32.0000 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | het | 98.3415 | 97.9871 | 98.6985 | 86.8786 | 1363 | 28 | 1365 | 18 | 4 | 22.2222 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 93.1777 | 38 | 4 | 38 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m2_e0 | homalt | 99.2147 | 99.3447 | 99.0850 | 85.6014 | 758 | 5 | 758 | 7 | 4 | 57.1429 | |
| jli-custom | INDEL | * | map_l125_m2_e1 | * | 98.5806 | 98.2921 | 98.8708 | 86.7884 | 2187 | 38 | 2189 | 25 | 8 | 32.0000 | |
| jli-custom | INDEL | * | map_l125_m2_e1 | het | 98.3616 | 98.0114 | 98.7143 | 86.9876 | 1380 | 28 | 1382 | 18 | 4 | 22.2222 | |
| jli-custom | INDEL | * | map_l125_m2_e1 | hetalt | 93.8272 | 88.3721 | 100.0000 | 93.2981 | 38 | 5 | 38 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m2_e1 | homalt | 99.2258 | 99.3540 | 99.0979 | 85.7143 | 769 | 5 | 769 | 7 | 4 | 57.1429 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | * | 97.4708 | 97.4708 | 97.4708 | 91.2896 | 501 | 13 | 501 | 13 | 4 | 30.7692 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | het | 97.0674 | 97.0674 | 97.0674 | 91.5678 | 331 | 10 | 331 | 10 | 1 | 10.0000 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.5556 | 8 | 1 | 8 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 90.1610 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | * | 98.3164 | 98.1315 | 98.5019 | 88.5230 | 1313 | 25 | 1315 | 20 | 7 | 35.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | het | 98.1285 | 98.0117 | 98.2456 | 88.8001 | 838 | 17 | 840 | 15 | 4 | 26.6667 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.2255 | 18 | 3 | 18 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m1_e0 | homalt | 98.9177 | 98.9177 | 98.9177 | 87.2411 | 457 | 5 | 457 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | * | map_l150_m2_e0 | * | 98.3640 | 98.1534 | 98.5755 | 89.3077 | 1382 | 26 | 1384 | 20 | 7 | 35.0000 | |
| jli-custom | INDEL | * | map_l150_m2_e0 | het | 98.1776 | 98.0132 | 98.3425 | 89.4239 | 888 | 18 | 890 | 15 | 4 | 26.6667 | |
| jli-custom | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.8333 | 18 | 3 | 18 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m2_e0 | homalt | 98.9605 | 98.9605 | 98.9605 | 88.3873 | 476 | 5 | 476 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | * | map_l150_m2_e1 | * | 98.2943 | 98.0542 | 98.5356 | 89.3280 | 1411 | 28 | 1413 | 21 | 8 | 38.0952 | |
| jli-custom | INDEL | * | map_l150_m2_e1 | het | 98.1579 | 97.9437 | 98.3731 | 89.4713 | 905 | 19 | 907 | 15 | 4 | 26.6667 | |
| jli-custom | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.6916 | 19 | 4 | 19 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m2_e1 | homalt | 98.8832 | 98.9837 | 98.7830 | 88.3699 | 487 | 5 | 487 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | * | 92.4051 | 93.5897 | 91.2500 | 97.4416 | 73 | 5 | 73 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | het | 91.7431 | 94.3396 | 89.2857 | 97.4110 | 50 | 3 | 50 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | * | map_l250_m0_e0 | homalt | 93.8776 | 92.0000 | 95.8333 | 97.2603 | 23 | 2 | 23 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | * | 96.2233 | 96.0656 | 96.3816 | 95.2500 | 293 | 12 | 293 | 11 | 4 | 36.3636 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | het | 95.8115 | 96.3158 | 95.3125 | 95.5556 | 183 | 7 | 183 | 9 | 2 | 22.2222 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.9487 | 4 | 2 | 4 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2706 | 106 | 3 | 106 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | * | 96.5204 | 96.3746 | 96.6667 | 95.5291 | 319 | 12 | 319 | 11 | 4 | 36.3636 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | het | 96.2085 | 96.6667 | 95.7547 | 95.7137 | 203 | 7 | 203 | 9 | 2 | 22.2222 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3051 | 4 | 2 | 4 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.8158 | 112 | 3 | 112 | 2 | 2 | 100.0000 | |