PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63051-63100 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 50.0000 | 4 | 1 | 4 | 0 | 0 | ||
| jli-custom | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 36.4146 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.3347 | 93.7357 | 96.9893 | 65.2412 | 9442 | 631 | 9310 | 289 | 255 | 88.2353 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3300 | 94.5545 | 96.1183 | 76.3193 | 3820 | 220 | 3541 | 143 | 117 | 81.8182 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5613 | 90.0889 | 99.5008 | 36.1205 | 3445 | 379 | 3588 | 18 | 17 | 94.4444 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4605 | 98.5514 | 94.4565 | 64.0006 | 2177 | 32 | 2181 | 128 | 121 | 94.5312 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.5610 | 100.0000 | 95.2381 | 99.1418 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.1814 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8904 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.3392 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1076 | 98.6776 | 99.5414 | 71.9967 | 93200 | 1249 | 93118 | 429 | 358 | 83.4499 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3482 | 99.1423 | 99.5550 | 73.6647 | 47857 | 414 | 47648 | 213 | 149 | 69.9531 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1334 | 94.7850 | 99.6011 | 59.6178 | 14613 | 804 | 14733 | 59 | 58 | 98.3051 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6951 | 99.8992 | 99.4918 | 73.2959 | 30730 | 31 | 30737 | 157 | 151 | 96.1783 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2520 | 97.4920 | 99.0239 | 63.2840 | 63712 | 1639 | 63508 | 626 | 529 | 84.5048 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4489 | 97.9134 | 98.9903 | 69.4877 | 29844 | 636 | 29412 | 300 | 222 | 74.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9266 | 94.4029 | 99.5890 | 36.4317 | 15770 | 935 | 15992 | 66 | 64 | 96.9697 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.1022 | 99.6257 | 98.5842 | 64.7104 | 18098 | 68 | 18104 | 260 | 243 | 93.4615 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3931 | 96.1967 | 98.6197 | 73.1673 | 2074 | 82 | 2072 | 29 | 15 | 51.7241 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5407 | 96.4172 | 98.6907 | 74.9539 | 1211 | 45 | 1206 | 16 | 6 | 37.5000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.2052 | 83.8323 | 100.0000 | 62.7604 | 140 | 27 | 143 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4343 | 98.6357 | 98.2337 | 71.3284 | 723 | 10 | 723 | 13 | 9 | 69.2308 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 97.1429 | 100.0000 | 94.4444 | 99.2340 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.2852 | 10 | 0 | 10 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.4369 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3529 | 98.9842 | 99.7244 | 73.0843 | 5067 | 52 | 5065 | 14 | 7 | 50.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4480 | 99.1333 | 99.7647 | 74.0763 | 2974 | 26 | 2968 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.0712 | 90.9871 | 99.5392 | 72.7044 | 212 | 21 | 216 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7085 | 99.7349 | 99.6820 | 71.4048 | 1881 | 5 | 1881 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6822 | 99.5584 | 99.8063 | 74.0988 | 3607 | 16 | 3607 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8361 | 99.7661 | 99.9062 | 74.5708 | 2133 | 5 | 2131 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.2817 | 91.6667 | 99.1935 | 76.9517 | 121 | 11 | 123 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8524 | 100.0000 | 99.7052 | 73.0058 | 1353 | 0 | 1353 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.5494 | 92.7996 | 96.3665 | 60.4456 | 5645 | 438 | 5543 | 209 | 197 | 94.2584 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4767 | 93.8476 | 95.1143 | 74.6842 | 2044 | 134 | 1830 | 94 | 84 | 89.3617 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.2361 | 89.5703 | 99.4147 | 34.3662 | 2439 | 284 | 2548 | 15 | 14 | 93.3333 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.1000 | 98.3080 | 92.0949 | 58.3471 | 1162 | 20 | 1165 | 100 | 99 | 99.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.9388 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.0149 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9489 | 97.2165 | 98.6923 | 51.4779 | 36847 | 1055 | 36679 | 486 | 451 | 92.7984 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1834 | 97.9681 | 98.3997 | 62.7279 | 14320 | 297 | 13958 | 227 | 196 | 86.3436 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0877 | 94.7254 | 99.5709 | 28.2155 | 13038 | 726 | 13226 | 57 | 56 | 98.2456 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7827 | 99.6639 | 97.9169 | 51.5925 | 9489 | 32 | 9495 | 202 | 199 | 98.5149 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5612 | 98.0245 | 99.1037 | 50.2646 | 31360 | 632 | 31292 | 283 | 258 | 91.1661 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7616 | 98.6343 | 98.8892 | 60.8084 | 12350 | 171 | 12197 | 137 | 115 | 83.9416 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.7497 | 95.9658 | 99.6012 | 27.0945 | 10657 | 448 | 10739 | 43 | 42 | 97.6744 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3106 | 99.8446 | 98.7824 | 50.8940 | 8353 | 13 | 8356 | 103 | 101 | 98.0583 | |