PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62651-62700 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.1013 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | * | 85.7143 | 81.8182 | 90.0000 | 96.3636 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 93.8776 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2036 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | * | 85.7143 | 81.8182 | 90.0000 | 96.3768 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 93.8776 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2143 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.0385 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 96.2963 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.8439 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.3636 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.9011 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.5517 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 98.9362 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 96.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | map_siren | * | 94.5527 | 90.6977 | 98.7500 | 90.1840 | 78 | 8 | 79 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | het | 91.3043 | 85.7143 | 97.6744 | 87.6791 | 42 | 7 | 42 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.4951 | 16 | 0 | 17 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 94.4904 | 20 | 1 | 20 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 93.7419 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 93.6842 | 24 | 0 | 24 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 92.3954 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | * | * | 99.4941 | 99.2055 | 99.7844 | 57.0293 | 149467 | 1197 | 149502 | 323 | 257 | 79.5666 | |
| jli-custom | INDEL | I1_5 | * | het | 99.6300 | 99.4800 | 99.7804 | 58.4682 | 78630 | 411 | 78600 | 173 | 112 | 64.7399 | |
| jli-custom | INDEL | I1_5 | * | hetalt | 96.7648 | 93.7740 | 99.9527 | 62.3212 | 10498 | 697 | 10559 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I1_5 | * | homalt | 99.8065 | 99.8527 | 99.7603 | 53.8126 | 60339 | 89 | 60343 | 145 | 140 | 96.5517 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | * | 99.4264 | 98.9689 | 99.8882 | 55.8919 | 33019 | 344 | 33052 | 37 | 27 | 72.9730 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | het | 99.6665 | 99.4282 | 99.9059 | 56.5291 | 18085 | 104 | 18053 | 17 | 9 | 52.9412 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | hetalt | 92.7842 | 86.7323 | 99.7439 | 70.2420 | 1497 | 229 | 1558 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | homalt | 99.8996 | 99.9182 | 99.8811 | 52.2818 | 13437 | 11 | 13441 | 16 | 14 | 87.5000 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | * | 96.2734 | 94.1810 | 98.4609 | 66.0757 | 11637 | 719 | 11643 | 182 | 172 | 94.5055 | |