PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61801-61850 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 87.7451 | 25 | 1 | 25 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 91.1281 | 81 | 1 | 81 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.0553 | 46 | 0 | 46 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 88.2609 | 27 | 1 | 27 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 98.8095 | 97.6471 | 100.0000 | 91.1230 | 83 | 2 | 83 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 92.1008 | 47 | 0 | 47 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.4528 | 8 | 1 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 88.0342 | 28 | 1 | 28 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5207 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.4684 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6102 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.9732 | 18 | 0 | 18 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.1938 | 11 | 0 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.2830 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.7854 | 22 | 0 | 22 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.8209 | 14 | 0 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.1220 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 95.9032 | 22 | 0 | 22 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 95.9420 | 14 | 0 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.2756 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_siren | * | 97.7205 | 96.8566 | 98.6000 | 82.0660 | 493 | 16 | 493 | 7 | 1 | 14.2857 | |
| jli-custom | INDEL | D6_15 | map_siren | het | 97.8495 | 97.5000 | 98.2014 | 83.8184 | 273 | 7 | 273 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | hetalt | 96.3731 | 93.9394 | 98.9362 | 75.0000 | 93 | 6 | 93 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 81.5562 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | segdup | * | 96.8085 | 95.2880 | 98.3784 | 93.0582 | 182 | 9 | 182 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | segdup | het | 96.6292 | 93.4783 | 100.0000 | 94.4373 | 86 | 6 | 86 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | segdup | hetalt | 96.8421 | 93.8776 | 100.0000 | 90.2335 | 46 | 3 | 46 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | segdup | homalt | 97.0874 | 100.0000 | 94.3396 | 91.8210 | 50 | 0 | 50 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 51.5152 | 16 | 1 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 52.6316 | 9 | 1 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | * | * | 96.2725 | 93.9627 | 98.6987 | 64.2188 | 5992 | 385 | 5992 | 79 | 51 | 64.5570 | |
| jli-custom | INDEL | I16_PLUS | * | het | 95.1311 | 91.7586 | 98.7610 | 68.1314 | 2494 | 224 | 2471 | 31 | 8 | 25.8065 | |
| jli-custom | INDEL | I16_PLUS | * | hetalt | 96.3839 | 93.3270 | 99.6479 | 53.7674 | 1958 | 140 | 1981 | 7 | 7 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | * | homalt | 98.0267 | 98.6547 | 97.4067 | 67.1719 | 1540 | 21 | 1540 | 41 | 36 | 87.8049 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | * | 95.8482 | 92.5898 | 99.3443 | 64.3692 | 1212 | 97 | 1212 | 8 | 4 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | het | 94.3784 | 89.7744 | 99.4801 | 60.9343 | 597 | 68 | 574 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.8474 | 92.5373 | 99.4030 | 66.7988 | 310 | 25 | 333 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8655 | 98.7055 | 99.0260 | 67.1642 | 305 | 4 | 305 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I16_PLUS | HG002compoundhet | * | 95.4155 | 93.2338 | 97.7017 | 49.8529 | 1998 | 145 | 1998 | 47 | 42 | 89.3617 | |