PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61451-61500 / 86044 show all | |||||||||||||||
| jli-custom | SNP | ti | map_l250_m1_e0 | * | 98.2684 | 97.2920 | 99.2647 | 86.0135 | 4455 | 124 | 4455 | 33 | 18 | 54.5455 | |
| jli-custom | SNP | ti | map_l250_m1_e0 | het | 97.6625 | 96.4286 | 98.9284 | 86.8086 | 2862 | 106 | 2862 | 31 | 16 | 51.6129 | |
| jli-custom | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l250_m1_e0 | homalt | 99.3746 | 98.8799 | 99.8743 | 84.2895 | 1589 | 18 | 1589 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | ti | map_l250_m2_e0 | * | 98.3980 | 97.5040 | 99.3085 | 86.8596 | 4883 | 125 | 4883 | 34 | 18 | 52.9412 | |
| jli-custom | SNP | ti | map_l250_m2_e0 | het | 97.8393 | 96.7117 | 98.9934 | 87.4744 | 3147 | 107 | 3147 | 32 | 16 | 50.0000 | |
| jli-custom | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.2941 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l250_m2_e0 | homalt | 99.4256 | 98.9708 | 99.8846 | 85.5643 | 1731 | 18 | 1731 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | * | 98.3796 | 97.4783 | 99.2976 | 86.9545 | 4948 | 128 | 4948 | 35 | 18 | 51.4286 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | het | 97.8071 | 96.6657 | 98.9758 | 87.5900 | 3189 | 110 | 3189 | 33 | 16 | 48.4848 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.2941 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l250_m2_e1 | homalt | 99.4331 | 98.9842 | 99.8861 | 85.6066 | 1754 | 18 | 1754 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | ti | map_siren | * | 99.6599 | 99.5825 | 99.7375 | 51.1882 | 99936 | 419 | 99929 | 263 | 66 | 25.0951 | |
| jli-custom | SNP | ti | map_siren | het | 99.5420 | 99.4806 | 99.6035 | 52.5864 | 62058 | 324 | 62054 | 247 | 50 | 20.2429 | |
| jli-custom | SNP | ti | map_siren | hetalt | 98.2456 | 98.2456 | 98.2456 | 70.4663 | 56 | 1 | 56 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_siren | homalt | 99.8561 | 99.7521 | 99.9604 | 48.6440 | 37822 | 94 | 37819 | 15 | 15 | 100.0000 | |
| jli-custom | SNP | ti | segdup | * | 99.6094 | 99.8669 | 99.3533 | 88.6519 | 19511 | 26 | 19511 | 127 | 6 | 4.7244 | |
| jli-custom | SNP | ti | segdup | het | 99.4165 | 99.8504 | 98.9864 | 89.3080 | 12012 | 18 | 12012 | 123 | 2 | 1.6260 | |
| jli-custom | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | SNP | ti | segdup | homalt | 99.9200 | 99.8934 | 99.9467 | 87.3710 | 7497 | 8 | 7497 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.4444 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 46.9136 | 43 | 1 | 43 | 0 | 0 | ||
| jli-custom | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | * | * | 99.9049 | 99.9528 | 99.8570 | 21.1774 | 969232 | 458 | 969166 | 1388 | 83 | 5.9798 | |
| jli-custom | SNP | tv | * | het | 99.8561 | 99.9410 | 99.7714 | 21.8920 | 591347 | 349 | 591292 | 1355 | 58 | 4.2804 | |
| jli-custom | SNP | tv | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 43.3225 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | * | homalt | 99.9816 | 99.9716 | 99.9915 | 19.9541 | 377016 | 107 | 377005 | 32 | 24 | 75.0000 | |
| jli-custom | SNP | tv | HG002complexvar | * | 99.9252 | 99.8822 | 99.9683 | 21.9781 | 245862 | 290 | 245791 | 78 | 33 | 42.3077 | |
| jli-custom | SNP | tv | HG002complexvar | het | 99.9074 | 99.8560 | 99.9588 | 21.3761 | 150514 | 217 | 150454 | 62 | 22 | 35.4839 | |
| jli-custom | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 36.8852 | 308 | 2 | 308 | 0 | 0 | ||
| jli-custom | SNP | tv | HG002complexvar | homalt | 99.9542 | 99.9254 | 99.9832 | 22.8543 | 95040 | 71 | 95029 | 16 | 11 | 68.7500 | |
| jli-custom | SNP | tv | HG002compoundhet | * | 99.6414 | 99.6526 | 99.6301 | 48.9851 | 8892 | 31 | 8889 | 33 | 14 | 42.4242 | |
| jli-custom | SNP | tv | HG002compoundhet | het | 99.4759 | 99.5292 | 99.4226 | 55.0428 | 4651 | 22 | 4649 | 27 | 10 | 37.0370 | |
| jli-custom | SNP | tv | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 23.0769 | 860 | 2 | 860 | 0 | 0 | ||
| jli-custom | SNP | tv | HG002compoundhet | homalt | 99.8081 | 99.7934 | 99.8228 | 43.2831 | 3381 | 7 | 3380 | 6 | 4 | 66.6667 | |
| jli-custom | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | tv | func_cds | * | 99.8629 | 99.9771 | 99.7489 | 28.1332 | 4370 | 1 | 4370 | 11 | 0 | 0.0000 | |
| jli-custom | SNP | tv | func_cds | het | 99.7746 | 99.9624 | 99.5876 | 29.8712 | 2656 | 1 | 2656 | 11 | 0 | 0.0000 | |
| jli-custom | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 98.5507 | 98.7097 | 98.3923 | 87.2069 | 306 | 4 | 306 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4293 | 97.9167 | 98.9474 | 87.9975 | 188 | 4 | 188 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5812 | 4 | 0 | 4 | 0 | 0 | ||