PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61001-61050 / 86044 show all | |||||||||||||||
| jli-custom | SNP | tv | map_l125_m0_e0 | homalt | 99.5485 | 99.2796 | 99.8189 | 66.7820 | 2205 | 16 | 2205 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | * | 99.2462 | 99.0572 | 99.4359 | 66.9313 | 15865 | 151 | 15864 | 90 | 26 | 28.8889 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | het | 98.9659 | 98.7656 | 99.1670 | 68.7560 | 10001 | 125 | 10000 | 84 | 21 | 25.0000 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m1_e0 | homalt | 99.7265 | 99.5563 | 99.8973 | 63.1639 | 5834 | 26 | 5834 | 6 | 5 | 83.3333 | |
| jli-custom | SNP | tv | map_l125_m2_e0 | * | 99.2648 | 99.0782 | 99.4521 | 69.0688 | 16337 | 152 | 16336 | 90 | 26 | 28.8889 | |
| jli-custom | SNP | tv | map_l125_m2_e0 | het | 98.9924 | 98.7933 | 99.1922 | 70.6143 | 10316 | 126 | 10315 | 84 | 21 | 25.0000 | |
| jli-custom | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m2_e0 | homalt | 99.7336 | 99.5679 | 99.8999 | 65.8835 | 5991 | 26 | 5991 | 6 | 5 | 83.3333 | |
| jli-custom | SNP | tv | map_l125_m2_e1 | * | 99.2722 | 99.0875 | 99.4576 | 69.1406 | 16505 | 152 | 16504 | 90 | 26 | 28.8889 | |
| jli-custom | SNP | tv | map_l125_m2_e1 | het | 99.0030 | 98.8060 | 99.2008 | 70.7055 | 10427 | 126 | 10426 | 84 | 21 | 25.0000 | |
| jli-custom | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m2_e1 | homalt | 99.7361 | 99.5719 | 99.9009 | 65.9064 | 6048 | 26 | 6048 | 6 | 5 | 83.3333 | |
| jli-custom | SNP | tv | map_l150_m0_e0 | * | 98.5661 | 97.9875 | 99.1515 | 75.2029 | 4090 | 84 | 4090 | 35 | 10 | 28.5714 | |
| jli-custom | SNP | tv | map_l150_m0_e0 | het | 98.0858 | 97.3268 | 98.8567 | 76.0708 | 2767 | 76 | 2767 | 32 | 7 | 21.8750 | |
| jli-custom | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.1765 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l150_m0_e0 | homalt | 99.5851 | 99.3976 | 99.7732 | 73.0220 | 1320 | 8 | 1320 | 3 | 3 | 100.0000 | |
| jli-custom | SNP | tv | map_l150_m1_e0 | * | 99.0626 | 98.7812 | 99.3456 | 71.0917 | 10779 | 133 | 10778 | 71 | 23 | 32.3944 | |
| jli-custom | SNP | tv | map_l150_m1_e0 | het | 98.7145 | 98.4020 | 99.0291 | 72.7212 | 6835 | 111 | 6834 | 67 | 19 | 28.3582 | |
| jli-custom | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4946 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l150_m1_e0 | homalt | 99.6698 | 99.4425 | 99.8982 | 67.6388 | 3924 | 22 | 3924 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | tv | map_l150_m2_e0 | * | 99.0817 | 98.8287 | 99.3360 | 73.0560 | 11222 | 133 | 11221 | 75 | 23 | 30.6667 | |
| jli-custom | SNP | tv | map_l150_m2_e0 | het | 98.7416 | 98.4694 | 99.0154 | 74.3882 | 7141 | 111 | 7140 | 71 | 19 | 26.7606 | |
| jli-custom | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l150_m2_e0 | homalt | 99.6809 | 99.4612 | 99.9016 | 70.2372 | 4061 | 22 | 4061 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | tv | map_l150_m2_e1 | * | 99.0935 | 98.8437 | 99.3446 | 73.0880 | 11369 | 133 | 11368 | 75 | 23 | 30.6667 | |
| jli-custom | SNP | tv | map_l150_m2_e1 | het | 98.7581 | 98.4894 | 99.0283 | 74.4439 | 7237 | 111 | 7236 | 71 | 19 | 26.7606 | |
| jli-custom | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l150_m2_e1 | homalt | 99.6848 | 99.4678 | 99.9028 | 70.2106 | 4112 | 22 | 4112 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | tv | map_l250_m0_e0 | * | 96.8085 | 95.1634 | 98.5115 | 89.9973 | 728 | 37 | 728 | 11 | 5 | 45.4545 | |
| jli-custom | SNP | tv | map_l250_m0_e0 | het | 96.2433 | 94.0559 | 98.5348 | 89.4472 | 538 | 34 | 538 | 8 | 2 | 25.0000 | |
| jli-custom | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | tv | map_l250_m0_e0 | homalt | 98.4456 | 98.4456 | 98.4456 | 91.2153 | 190 | 3 | 190 | 3 | 3 | 100.0000 | |
| jli-custom | SNP | tv | map_l250_m1_e0 | * | 97.9966 | 97.0155 | 98.9977 | 85.0101 | 2568 | 79 | 2568 | 26 | 11 | 42.3077 | |
| jli-custom | SNP | tv | map_l250_m1_e0 | het | 97.3617 | 96.0269 | 98.7342 | 85.3704 | 1716 | 71 | 1716 | 22 | 7 | 31.8182 | |
| jli-custom | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.8367 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l250_m1_e0 | homalt | 99.2974 | 99.0654 | 99.5305 | 84.1518 | 848 | 8 | 848 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | * | 98.1086 | 97.1895 | 99.0453 | 86.0929 | 2801 | 81 | 2801 | 27 | 12 | 44.4444 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | het | 97.5202 | 96.2887 | 98.7837 | 86.3722 | 1868 | 72 | 1868 | 23 | 8 | 34.7826 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5254 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l250_m2_e0 | homalt | 99.3044 | 99.0395 | 99.5708 | 85.4375 | 928 | 9 | 928 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | tv | map_l250_m2_e1 | * | 98.1308 | 97.2222 | 99.0566 | 86.1913 | 2835 | 81 | 2835 | 27 | 12 | 44.4444 | |
| jli-custom | SNP | tv | map_l250_m2_e1 | het | 97.5522 | 96.3359 | 98.7996 | 86.4727 | 1893 | 72 | 1893 | 23 | 8 | 34.7826 | |
| jli-custom | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5254 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l250_m2_e1 | homalt | 99.3111 | 99.0486 | 99.5749 | 85.5298 | 937 | 9 | 937 | 4 | 4 | 100.0000 | |
| jli-custom | SNP | tv | map_siren | * | 99.6133 | 99.5493 | 99.6773 | 55.0835 | 45723 | 207 | 45718 | 148 | 36 | 24.3243 | |
| jli-custom | SNP | tv | map_siren | het | 99.4790 | 99.4407 | 99.5172 | 56.5108 | 28449 | 160 | 28447 | 138 | 26 | 18.8406 | |
| jli-custom | SNP | tv | map_siren | hetalt | 98.7654 | 98.7654 | 98.7654 | 71.5789 | 80 | 1 | 80 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_siren | homalt | 99.8403 | 99.7332 | 99.9477 | 52.3546 | 17194 | 46 | 17191 | 9 | 9 | 100.0000 | |
| jli-custom | SNP | tv | segdup | * | 99.5673 | 99.7773 | 99.3581 | 90.4270 | 8513 | 19 | 8513 | 55 | 6 | 10.9091 | |