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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1191 1192 1193 1194 1195 1196 1197 1198 1199 ... 1720 1721 » 59701-59750 / 86044 show all
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	98.8962	10	0	10	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	98.8525	7	0	7	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	96.6667	1	0	1	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	99.2481	2	0	2	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3837	99.3515	99.4160	78.0297	1532	10	1532	9	5	55.5556
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4583	99.5662	99.3506	78.2639	918	4	918	6	3	50.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.8333	93.2432	98.5714	81.3830	69	5	69	1	1	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	77.0842	545	1	545	2	1	50.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5296	99.5296	99.5296	81.1592	1058	5	1058	5	2	40.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6198	99.6956	99.5441	80.5441	655	2	655	3	1	33.3333
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	94.4444	91.8919	97.1429	87.8472	34	3	34	1	1	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8647	100.0000	99.7297	81.2373	369	0	369	1	0	0.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.6701	85.6906	94.0373	58.9423	2066	345	2066	131	124	94.6565
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	92.8775	93.1174	92.6389	73.8277	690	51	667	53	47	88.6792
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	87.6621	78.3888	99.4236	31.5582	1012	279	1035	6	5	83.3333
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.3252	96.0422	83.4862	59.5922	364	15	364	72	72	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	98.3333	1	0	1	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.7778	1	0	1	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.2893	95.0573	97.5536	44.7868	19578	1018	19579	491	468	95.3157
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.5399	97.9550	97.1282	57.0303	7233	151	7204	213	194	91.0798
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.3059	89.5985	99.5353	25.4660	7253	842	7283	34	30	88.2353
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.4266	99.5114	95.4273	42.4504	5092	25	5092	244	244	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.1107	96.2703	97.9659	43.0945	17578	681	17579	365	348	95.3425
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.0315	98.4878	97.5794	54.7750	6578	101	6571	163	149	91.4110
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	95.4396	91.6508	99.5551	24.5986	6257	570	6265	28	25	89.2857
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.0972	99.7896	96.4613	40.7376	4743	10	4743	174	174	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.4762	95.2989	97.6829	51.6687	21204	1046	21205	503	474	94.2346
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7047	98.0586	97.3534	62.7778	8233	163	8203	223	199	89.2377
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.2746	89.5387	99.5395	27.7522	7318	855	7349	34	30	88.2353
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.6339	99.5071	95.8298	51.0822	5653	28	5653	246	245	99.5935
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.1875	96.2685	98.1242	59.9927	30236	1172	30236	578	510	88.2353
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.1543	98.3354	97.9739	68.1869	13528	229	13491	279	216	77.4194
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.2945	99.6172	97.0064	59.6494	8328	32	8328	257	256	99.6109
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.6511	96.9845	98.3269	41.1237	23800	740	23802	405	370	91.3580
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.4328	98.7316	98.1358	49.9641	10275	132	10265	195	165	84.6154
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	95.2271	91.4028	99.3853	26.0145	6294	592	6306	39	35	89.7436
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.7235	99.7792	97.6898	36.3761	7231	16	7231	171	170	99.4152
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	64.8218	55.9541	77.0297	55.2305	390	307	389	116	108	93.1034
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	67.8262	71.8519	64.2276	75.9766	97	38	79	44	37	84.0909
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	64.0121	47.2505	99.2032	31.2329	232	259	249	2	1	50.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	60.3960	85.9155	46.5649	47.8088	61	10	61	70	70	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_gt200	*		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7712	99.7476	99.7949	55.7977	25295	64	25298	52	25	48.0769
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7395	99.7766	99.7024	56.2348	14737	33	14739	44	17	38.6364

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