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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1190 1191 1192 1193 1194 1195 1196 1197 1198 ... 1720 1721 » 59651-59700 / 86044 show all
jlack-gatk	INDEL	D16_PLUS	segdup	hetalt	87.5000	77.7778	100.0000	93.1624	7	2	8	0	0
jlack-gatk	INDEL	D16_PLUS	segdup	homalt	100.0000	100.0000	100.0000	96.3746	12	0	12	0	0
jlack-gatk	INDEL	D16_PLUS	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D16_PLUS	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D16_PLUS	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D16_PLUS	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	42.8571	4	0	4	0	0
jlack-gatk	INDEL	D16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	0.0000	4	0	4	0	0
jlack-gatk	INDEL	D16_PLUS	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	D16_PLUS	tech_badpromoters	homalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	*	*	99.0320	99.1134	98.9507	60.1218	145444	1301	145502	1543	552	35.7745
jlack-gatk	INDEL	D1_5	*	het	99.1283	99.6506	98.6115	59.9642	87268	306	87281	1229	246	20.0163
jlack-gatk	INDEL	D1_5	*	hetalt	95.0041	90.9322	99.4577	62.5612	9316	929	9354	51	46	90.1961
jlack-gatk	INDEL	D1_5	*	homalt	99.6645	99.8651	99.4647	59.9060	48860	66	48867	263	260	98.8593
jlack-gatk	INDEL	D1_5	HG002complexvar	*	99.4067	99.2878	99.5259	58.0276	32482	233	32539	155	92	59.3548
jlack-gatk	INDEL	D1_5	HG002complexvar	het	99.5570	99.5377	99.5763	55.9428	20669	96	20681	88	29	32.9545
jlack-gatk	INDEL	D1_5	HG002complexvar	hetalt	93.7719	91.1243	96.5779	72.4607	1232	120	1270	45	42	93.3333
jlack-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8161	99.8396	99.7926	59.1577	10581	17	10588	22	21	95.4545
jlack-gatk	INDEL	D1_5	HG002compoundhet	*	93.7462	92.1291	95.4211	64.7145	11272	963	11274	541	497	91.8669
jlack-gatk	INDEL	D1_5	HG002compoundhet	het	92.3786	97.8009	87.5259	78.5190	1690	38	1691	241	200	82.9876
jlack-gatk	INDEL	D1_5	HG002compoundhet	hetalt	95.0540	90.9554	99.5394	57.6003	9292	924	9293	43	40	93.0233
jlack-gatk	INDEL	D1_5	HG002compoundhet	homalt	69.2124	99.6564	53.0165	77.8632	290	1	290	257	257	100.0000
jlack-gatk	INDEL	D1_5	decoy	*	80.0000	100.0000	66.6667	99.9631	4	0	4	2	0	0.0000
jlack-gatk	INDEL	D1_5	decoy	het	66.6667	100.0000	50.0000	99.9720	2	0	2	2	0	0.0000
jlack-gatk	INDEL	D1_5	decoy	hetalt	100.0000	100.0000	100.0000	99.6825	1	0	1	0	0
jlack-gatk	INDEL	D1_5	decoy	homalt	100.0000	100.0000	100.0000	99.9381	1	0	1	0	0
jlack-gatk	INDEL	D1_5	func_cds	*	97.2644	100.0000	94.6746	52.7933	159	0	160	9	0	0.0000
jlack-gatk	INDEL	D1_5	func_cds	het	95.0276	100.0000	90.5263	62.0000	85	0	86	9	0	0.0000
jlack-gatk	INDEL	D1_5	func_cds	hetalt		0.0000		100.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	func_cds	homalt	100.0000	100.0000	100.0000	30.8411	74	0	74	0	0
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.3416	88.0522	94.8864	61.9636	3508	476	3507	189	176	93.1217
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	94.4592	94.7518	94.1685	74.3063	1336	74	1308	81	70	86.4198
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	88.0509	79.0340	99.3902	32.6949	1440	382	1467	9	8	88.8889
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	92.4826	97.3404	88.0866	60.7649	732	20	732	99	98	98.9899
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	98.8589	11	0	11	0	0
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	98.7768	8	0	8	0	0
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	97.1429	1	0	1	0	0
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	99.2727	2	0	2	0	0
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.8272	98.5395	99.1166	73.0877	63490	941	63503	566	450	79.5053
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2219	99.3862	99.0582	74.4553	33032	204	33027	314	203	64.6497
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.8359	92.4591	99.4688	63.5748	8595	701	8613	46	42	91.3043
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4496	99.8356	99.0666	73.6565	21863	36	21863	206	205	99.5146
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.1875	96.2685	98.1242	59.9927	30236	1172	30236	578	510	88.2353
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.1543	98.3354	97.9739	68.1869	13528	229	13491	279	216	77.4194
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.2945	99.6172	97.0064	59.6494	8328	32	8328	257	256	99.6109
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.4121	96.3255	98.5235	67.0062	734	28	734	11	7	63.6364
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	97.9263	97.7011	98.1524	69.9306	425	10	425	8	5	62.5000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	87.8049	78.2609	100.0000	58.7786	54	15	54	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8372	98.8372	98.8372	62.4454	255	3	255	3	2	66.6667

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