PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59501-59550 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | tv | HG002compoundhet | * | 99.3236 | 99.5965 | 99.0521 | 49.7619 | 8887 | 36 | 8882 | 85 | 24 | 28.2353 | |
| jlack-gatk | SNP | tv | HG002compoundhet | het | 98.9462 | 99.4650 | 98.4329 | 56.5753 | 4648 | 25 | 4648 | 74 | 14 | 18.9189 | |
| jlack-gatk | SNP | tv | HG002compoundhet | hetalt | 99.6512 | 99.4200 | 99.8834 | 22.4231 | 857 | 5 | 857 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | HG002compoundhet | homalt | 99.7638 | 99.8229 | 99.7048 | 42.2900 | 3382 | 6 | 3377 | 10 | 9 | 90.0000 | |
| jlack-gatk | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | func_cds | * | 98.8573 | 99.9771 | 97.7624 | 38.5704 | 4370 | 1 | 4369 | 100 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | func_cds | het | 98.1334 | 99.9624 | 96.3702 | 44.4444 | 2656 | 1 | 2655 | 100 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.5172 | 10 | 0 | 10 | 0 | 0 | ||
| jlack-gatk | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.4919 | 1704 | 0 | 1704 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.9076 | 98.5488 | 99.2691 | 69.3358 | 1494 | 22 | 1494 | 11 | 2 | 18.1818 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.4304 | 97.9839 | 98.8810 | 71.7122 | 972 | 20 | 972 | 11 | 2 | 18.1818 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.8088 | 99.6183 | 100.0000 | 63.4198 | 522 | 2 | 522 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9413 | 99.8121 | 98.0856 | 65.0500 | 27626 | 52 | 27616 | 539 | 26 | 4.8238 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.4079 | 99.8008 | 97.0534 | 66.9969 | 17533 | 35 | 17523 | 532 | 19 | 3.5714 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 81.4286 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8910 | 99.8415 | 99.9405 | 60.8743 | 10081 | 16 | 10081 | 6 | 6 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8898 | 99.3274 | 96.4931 | 80.2111 | 14473 | 98 | 14473 | 526 | 28 | 5.3232 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.8586 | 99.2554 | 94.5749 | 83.0098 | 9065 | 68 | 9065 | 520 | 22 | 4.2308 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1406 | 15 | 0 | 15 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.6673 | 99.4468 | 99.8889 | 71.7685 | 5393 | 30 | 5393 | 6 | 6 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2881 | 99.1766 | 99.3998 | 50.9385 | 1325 | 11 | 1325 | 8 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8869 | 98.7135 | 99.0610 | 53.7961 | 844 | 11 | 844 | 8 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 44.7761 | 481 | 0 | 481 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2911 | 99.8620 | 98.7267 | 65.1671 | 2171 | 3 | 2171 | 28 | 1 | 3.5714 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9286 | 99.8558 | 98.0184 | 66.5562 | 1385 | 2 | 1385 | 28 | 1 | 3.5714 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9363 | 99.8728 | 100.0000 | 62.3140 | 785 | 1 | 785 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0024 | 99.9306 | 98.0913 | 69.9262 | 1439 | 1 | 1439 | 28 | 1 | 3.5714 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4914 | 100.0000 | 97.0276 | 71.0154 | 914 | 0 | 914 | 28 | 1 | 3.5714 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9047 | 99.8095 | 100.0000 | 67.7340 | 524 | 1 | 524 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 95.9752 | 93.9394 | 98.1013 | 91.0986 | 155 | 10 | 155 | 3 | 2 | 66.6667 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4733 | 93.5484 | 97.4790 | 90.8672 | 116 | 8 | 116 | 3 | 2 | 66.6667 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.5000 | 95.1220 | 100.0000 | 91.6844 | 39 | 2 | 39 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||