PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59451-59500 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 90.3226 | 93.3333 | 87.5000 | 86.0870 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.0574 | 98.2530 | 99.8751 | 68.9978 | 7199 | 128 | 7199 | 9 | 7 | 77.7778 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | * | 96.1925 | 98.6739 | 93.8329 | 83.2384 | 20240 | 272 | 20236 | 1330 | 126 | 9.4737 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | het | 94.5791 | 98.9054 | 90.6154 | 86.2755 | 12740 | 141 | 12736 | 1319 | 117 | 8.8704 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 90.3226 | 93.3333 | 87.5000 | 87.8788 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.0801 | 98.2931 | 99.8799 | 71.3088 | 7486 | 130 | 7486 | 9 | 7 | 77.7778 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | * | 96.1985 | 98.6826 | 93.8363 | 83.3002 | 20450 | 273 | 20446 | 1343 | 127 | 9.4564 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | het | 94.5873 | 98.9166 | 90.6210 | 86.3363 | 12874 | 141 | 12870 | 1332 | 118 | 8.8589 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 90.3226 | 93.3333 | 87.5000 | 87.8788 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.0828 | 98.2972 | 99.8811 | 71.3252 | 7562 | 131 | 7562 | 9 | 7 | 77.7778 | |
| jlack-gatk | SNP | ti | map_l250_m0_e0 | * | 92.5591 | 97.1533 | 88.3798 | 95.5349 | 1331 | 39 | 1331 | 175 | 20 | 11.4286 | |
| jlack-gatk | SNP | ti | map_l250_m0_e0 | het | 90.4950 | 97.8587 | 84.1621 | 96.2262 | 914 | 20 | 914 | 172 | 18 | 10.4651 | |
| jlack-gatk | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jlack-gatk | SNP | ti | map_l250_m0_e0 | homalt | 97.5439 | 95.6422 | 99.5227 | 91.4751 | 417 | 19 | 417 | 2 | 1 | 50.0000 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | * | 94.0942 | 97.9472 | 90.5329 | 92.4177 | 4485 | 94 | 4485 | 469 | 43 | 9.1684 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | het | 91.8885 | 98.2817 | 86.2762 | 93.7627 | 2917 | 51 | 2917 | 464 | 39 | 8.4052 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 94.4444 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | homalt | 98.5516 | 97.3864 | 99.7451 | 85.8112 | 1565 | 42 | 1565 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | ti | map_l250_m2_e0 | * | 94.3425 | 98.0631 | 90.8939 | 92.7804 | 4911 | 97 | 4911 | 492 | 44 | 8.9431 | |
| jlack-gatk | SNP | ti | map_l250_m2_e0 | het | 92.2213 | 98.3712 | 86.7950 | 94.0302 | 3201 | 53 | 3201 | 487 | 40 | 8.2136 | |
| jlack-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 94.0476 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m2_e0 | homalt | 98.6412 | 97.5415 | 99.7661 | 86.8218 | 1706 | 43 | 1706 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | * | 94.3407 | 98.0299 | 90.9191 | 92.8360 | 4976 | 100 | 4976 | 497 | 46 | 9.2555 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | het | 92.2399 | 98.3631 | 86.8344 | 94.0808 | 3245 | 54 | 3245 | 492 | 42 | 8.5366 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 94.0476 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | homalt | 98.6012 | 97.4605 | 99.7689 | 86.8645 | 1727 | 45 | 1727 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | ti | map_siren | * | 98.3403 | 99.3782 | 97.3238 | 62.0115 | 99731 | 624 | 99716 | 2742 | 240 | 8.7527 | |
| jlack-gatk | SNP | ti | map_siren | het | 97.5925 | 99.4357 | 95.8164 | 66.8895 | 62030 | 352 | 62021 | 2708 | 216 | 7.9764 | |
| jlack-gatk | SNP | ti | map_siren | hetalt | 94.8276 | 96.4912 | 93.2203 | 77.6515 | 55 | 2 | 55 | 4 | 4 | 100.0000 | |
| jlack-gatk | SNP | ti | map_siren | homalt | 99.6031 | 99.2879 | 99.9204 | 49.0602 | 37646 | 270 | 37640 | 30 | 20 | 66.6667 | |
| jlack-gatk | SNP | ti | segdup | * | 98.4574 | 99.8106 | 97.1403 | 92.8551 | 19500 | 37 | 19498 | 574 | 10 | 1.7422 | |
| jlack-gatk | SNP | ti | segdup | het | 97.5937 | 99.8088 | 95.4748 | 94.2828 | 12007 | 23 | 12005 | 569 | 5 | 0.8787 | |
| jlack-gatk | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.9324 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | segdup | homalt | 99.8800 | 99.8135 | 99.9466 | 87.6556 | 7491 | 14 | 7491 | 4 | 4 | 100.0000 | |
| jlack-gatk | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | ti | tech_badpromoters | * | 98.2659 | 100.0000 | 96.5909 | 46.0123 | 85 | 0 | 85 | 3 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | tech_badpromoters | het | 96.7033 | 100.0000 | 93.6170 | 48.9130 | 44 | 0 | 44 | 3 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.2535 | 41 | 0 | 41 | 0 | 0 | ||
| jlack-gatk | SNP | tv | * | * | 99.5956 | 99.9388 | 99.2547 | 27.4223 | 969097 | 593 | 969008 | 7276 | 194 | 2.6663 | |
| jlack-gatk | SNP | tv | * | het | 99.3606 | 99.9332 | 98.7945 | 31.3268 | 591301 | 395 | 591230 | 7214 | 153 | 2.1209 | |
| jlack-gatk | SNP | tv | * | hetalt | 99.0280 | 99.4259 | 98.6333 | 53.8866 | 866 | 5 | 866 | 12 | 11 | 91.6667 | |
| jlack-gatk | SNP | tv | * | homalt | 99.9678 | 99.9488 | 99.9867 | 20.1040 | 376930 | 193 | 376912 | 50 | 30 | 60.0000 | |
| jlack-gatk | SNP | tv | HG002complexvar | * | 99.9000 | 99.8932 | 99.9069 | 22.4572 | 245889 | 263 | 245795 | 229 | 81 | 35.3712 | |
| jlack-gatk | SNP | tv | HG002complexvar | het | 99.8776 | 99.8932 | 99.8620 | 22.3009 | 150570 | 161 | 150494 | 208 | 64 | 30.7692 | |
| jlack-gatk | SNP | tv | HG002complexvar | hetalt | 99.0323 | 99.0323 | 99.0323 | 39.5712 | 307 | 3 | 307 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | HG002complexvar | homalt | 99.9385 | 99.8959 | 99.9811 | 22.6324 | 95012 | 99 | 94994 | 18 | 14 | 77.7778 | |