PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58601-58650 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | * | map_l150_m2_e0 | het | 93.6840 | 98.8973 | 88.9927 | 86.5727 | 19911 | 222 | 19905 | 2462 | 176 | 7.1487 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.0914 | 98.3503 | 99.8438 | 71.6709 | 11506 | 193 | 11506 | 18 | 13 | 72.2222 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | * | 95.6027 | 98.6992 | 92.6947 | 83.7025 | 31791 | 419 | 31785 | 2505 | 193 | 7.7046 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | het | 93.7014 | 98.9098 | 89.0141 | 86.6201 | 20141 | 222 | 20135 | 2485 | 178 | 7.1630 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | homalt | 99.0927 | 98.3512 | 99.8455 | 71.6669 | 11632 | 195 | 11632 | 18 | 13 | 72.2222 | |
| jlack-gatk | SNP | * | map_l250_m0_e0 | * | 91.3907 | 96.9555 | 86.4301 | 95.6372 | 2070 | 65 | 2070 | 325 | 28 | 8.6154 | |
| jlack-gatk | SNP | * | map_l250_m0_e0 | het | 89.1456 | 97.3440 | 82.2210 | 96.2201 | 1466 | 40 | 1466 | 317 | 23 | 7.2555 | |
| jlack-gatk | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 98.3051 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jlack-gatk | SNP | * | map_l250_m0_e0 | homalt | 97.4194 | 96.0254 | 98.8543 | 92.0297 | 604 | 25 | 604 | 7 | 4 | 57.1429 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | * | 93.2444 | 97.7569 | 89.1302 | 92.5027 | 7060 | 162 | 7060 | 861 | 66 | 7.6655 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | het | 90.7389 | 97.8759 | 84.5721 | 93.7676 | 4654 | 101 | 4654 | 849 | 57 | 6.7138 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 96.4912 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | homalt | 98.5442 | 97.5639 | 99.5443 | 85.9993 | 2403 | 60 | 2403 | 11 | 8 | 72.7273 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | * | 93.5078 | 97.9074 | 89.4865 | 92.8768 | 7720 | 165 | 7720 | 907 | 67 | 7.3870 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | het | 91.0733 | 98.0169 | 85.0484 | 94.0579 | 5091 | 103 | 5091 | 895 | 58 | 6.4805 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 96.3504 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | homalt | 98.6471 | 97.7290 | 99.5827 | 86.9731 | 2625 | 61 | 2625 | 11 | 8 | 72.7273 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | * | 93.5343 | 97.8966 | 89.5442 | 92.9358 | 7819 | 168 | 7819 | 913 | 69 | 7.5575 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | het | 91.1258 | 98.0243 | 85.1345 | 94.1114 | 5160 | 104 | 5160 | 901 | 60 | 6.6593 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 96.3504 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | homalt | 98.6256 | 97.6821 | 99.5874 | 87.0236 | 2655 | 63 | 2655 | 11 | 8 | 72.7273 | |
| jlack-gatk | SNP | * | map_siren | * | 98.0143 | 99.3920 | 96.6743 | 64.0744 | 145339 | 889 | 145316 | 4999 | 358 | 7.1614 | |
| jlack-gatk | SNP | * | map_siren | het | 97.0812 | 99.4593 | 94.8142 | 68.9379 | 90499 | 492 | 90485 | 4949 | 324 | 6.5468 | |
| jlack-gatk | SNP | * | map_siren | hetalt | 95.1220 | 96.2963 | 93.9759 | 79.4045 | 78 | 3 | 78 | 5 | 4 | 80.0000 | |
| jlack-gatk | SNP | * | map_siren | homalt | 99.6008 | 99.2857 | 99.9179 | 50.5286 | 54762 | 394 | 54753 | 45 | 30 | 66.6667 | |
| jlack-gatk | SNP | * | segdup | * | 98.2374 | 99.8040 | 96.7192 | 93.4608 | 28012 | 55 | 28006 | 950 | 16 | 1.6842 | |
| jlack-gatk | SNP | * | segdup | het | 97.2497 | 99.7806 | 94.8441 | 94.7945 | 17279 | 38 | 17273 | 939 | 5 | 0.5325 | |
| jlack-gatk | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 98.2533 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | segdup | homalt | 99.8743 | 99.8418 | 99.9069 | 88.3916 | 10726 | 17 | 10726 | 10 | 10 | 100.0000 | |
| jlack-gatk | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | * | tech_badpromoters | * | 97.5000 | 99.3631 | 95.7055 | 49.3789 | 156 | 1 | 156 | 7 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 50.5882 | 77 | 0 | 77 | 7 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | SNP | * | tech_badpromoters | homalt | 99.3711 | 98.7500 | 100.0000 | 48.0263 | 79 | 1 | 79 | 0 | 0 | ||
| jlack-gatk | SNP | ti | * | * | 99.7777 | 99.9393 | 99.6165 | 21.7408 | 2084246 | 1265 | 2084182 | 8024 | 364 | 4.5364 | |
| jlack-gatk | SNP | ti | * | het | 99.6581 | 99.9316 | 99.3861 | 24.9292 | 1281014 | 877 | 1280960 | 7913 | 288 | 3.6396 | |
| jlack-gatk | SNP | ti | * | hetalt | 98.8034 | 99.3127 | 98.2993 | 52.8846 | 578 | 4 | 578 | 10 | 10 | 100.0000 | |
| jlack-gatk | SNP | ti | * | homalt | 99.9698 | 99.9522 | 99.9874 | 15.9699 | 802654 | 384 | 802644 | 101 | 66 | 65.3465 | |
| jlack-gatk | SNP | ti | HG002complexvar | * | 99.9170 | 99.8944 | 99.9396 | 17.8349 | 507899 | 537 | 507834 | 307 | 122 | 39.7394 | |
| jlack-gatk | SNP | ti | HG002complexvar | het | 99.8980 | 99.8818 | 99.9142 | 17.5660 | 314394 | 372 | 314340 | 270 | 88 | 32.5926 | |
| jlack-gatk | SNP | ti | HG002complexvar | hetalt | 98.7893 | 98.5507 | 99.0291 | 39.5894 | 204 | 3 | 204 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | HG002complexvar | homalt | 99.9491 | 99.9163 | 99.9819 | 18.2375 | 193301 | 162 | 193290 | 35 | 32 | 91.4286 | |
| jlack-gatk | SNP | ti | HG002compoundhet | * | 99.6570 | 99.7425 | 99.5716 | 36.7466 | 17433 | 45 | 17431 | 75 | 22 | 29.3333 | |
| jlack-gatk | SNP | ti | HG002compoundhet | het | 99.4749 | 99.6739 | 99.2768 | 41.5881 | 9474 | 31 | 9472 | 69 | 16 | 23.1884 | |
| jlack-gatk | SNP | ti | HG002compoundhet | hetalt | 99.6534 | 99.3092 | 100.0000 | 21.8750 | 575 | 4 | 575 | 0 | 0 | ||