PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58101-58150 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l125_m2_e1 | homalt | 99.8003 | 99.7775 | 99.8231 | 68.9786 | 17493 | 39 | 17493 | 31 | 13 | 41.9355 | |
| hfeng-pmm3 | SNP | * | map_l150_m0_e0 | * | 99.1727 | 99.1439 | 99.2015 | 79.7142 | 11929 | 103 | 11926 | 96 | 9 | 9.3750 | |
| hfeng-pmm3 | SNP | * | map_l150_m0_e0 | het | 98.9660 | 98.8665 | 99.0658 | 81.0107 | 7850 | 90 | 7847 | 74 | 2 | 2.7027 | |
| hfeng-pmm3 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l150_m0_e0 | homalt | 99.5725 | 99.6821 | 99.4632 | 76.5815 | 4076 | 13 | 4076 | 22 | 7 | 31.8182 | |
| hfeng-pmm3 | SNP | * | map_l150_m1_e0 | * | 99.4475 | 99.3825 | 99.5125 | 74.0748 | 30420 | 189 | 30414 | 149 | 23 | 15.4362 | |
| hfeng-pmm3 | SNP | * | map_l150_m1_e0 | het | 99.2744 | 99.1820 | 99.3670 | 75.4908 | 19158 | 158 | 19152 | 122 | 13 | 10.6557 | |
| hfeng-pmm3 | SNP | * | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l150_m1_e0 | homalt | 99.7427 | 99.7250 | 99.7604 | 71.2100 | 11242 | 31 | 11242 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e0 | * | 99.4612 | 99.4035 | 99.5190 | 75.5411 | 31662 | 190 | 31656 | 153 | 23 | 15.0327 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e0 | het | 99.2915 | 99.2103 | 99.3729 | 76.6202 | 19974 | 159 | 19968 | 126 | 13 | 10.3175 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l150_m2_e0 | homalt | 99.7521 | 99.7350 | 99.7691 | 73.4090 | 11668 | 31 | 11668 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e1 | * | 99.4641 | 99.4070 | 99.5212 | 75.5898 | 32019 | 191 | 32013 | 154 | 23 | 14.9351 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e1 | het | 99.2946 | 99.2143 | 99.3751 | 76.6790 | 20203 | 160 | 20197 | 127 | 13 | 10.2362 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l150_m2_e1 | homalt | 99.7548 | 99.7379 | 99.7716 | 73.4338 | 11796 | 31 | 11796 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | * | 98.2916 | 98.3607 | 98.2226 | 92.8676 | 2100 | 35 | 2100 | 38 | 6 | 15.7895 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | het | 98.0731 | 98.0080 | 98.1383 | 92.9489 | 1476 | 30 | 1476 | 28 | 1 | 3.5714 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 76.3975 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 79.0123 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.2927 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 84.6154 | 2 | 2 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 95.1852 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 93.0769 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.6923 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 94.1964 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 92.0000 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.8571 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 96.9231 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 94.8177 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.2331 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.1176 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 94.8473 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 93.2836 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.2857 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 96.5066 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 96.1538 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |