PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57851-57900 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | * | 99.2121 | 98.5267 | 99.9072 | 56.6840 | 32233 | 482 | 32285 | 30 | 19 | 63.3333 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | het | 98.9670 | 98.0448 | 99.9068 | 54.1875 | 20359 | 406 | 20363 | 19 | 11 | 57.8947 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | hetalt | 97.5431 | 95.3402 | 99.8501 | 71.8149 | 1289 | 63 | 1332 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | homalt | 99.8962 | 99.8773 | 99.9151 | 58.2388 | 10585 | 13 | 10590 | 9 | 8 | 88.8889 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | * | 95.5863 | 92.3089 | 99.1049 | 60.5859 | 11294 | 941 | 11293 | 102 | 95 | 93.1373 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | het | 87.8989 | 80.4977 | 96.7989 | 73.8775 | 1391 | 337 | 1391 | 46 | 42 | 91.3043 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | hetalt | 96.9544 | 94.1073 | 99.9792 | 56.3965 | 9614 | 602 | 9613 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | homalt | 91.1672 | 99.3127 | 84.2566 | 74.7609 | 289 | 2 | 289 | 54 | 53 | 98.1481 | |
| hfeng-pmm3 | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9249 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9437 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6198 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9339 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 159 | 0 | 160 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1558 | 85 | 0 | 86 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 28.8462 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4481 | 90.3112 | 98.9821 | 58.9266 | 3598 | 386 | 3598 | 37 | 30 | 81.0811 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4016 | 92.2695 | 98.7539 | 72.0200 | 1301 | 109 | 1268 | 16 | 9 | 56.2500 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.4122 | 85.8946 | 100.0000 | 32.3455 | 1565 | 257 | 1598 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.2757 | 97.3404 | 97.2112 | 60.3476 | 732 | 20 | 732 | 21 | 21 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.8124 | 10 | 1 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.6742 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.2754 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1846 | 98.5457 | 99.8318 | 70.9620 | 63494 | 937 | 63506 | 107 | 86 | 80.3738 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1963 | 98.5919 | 99.8081 | 71.9245 | 32768 | 468 | 32762 | 63 | 44 | 69.8413 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.6101 | 95.3421 | 99.9887 | 62.3644 | 8863 | 433 | 8881 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8197 | 99.8356 | 99.8037 | 72.1124 | 21863 | 36 | 21863 | 43 | 42 | 97.6744 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0742 | 96.5582 | 99.6386 | 56.1134 | 30327 | 1081 | 30328 | 110 | 94 | 85.4545 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.1075 | 96.6926 | 99.5645 | 63.4833 | 13302 | 455 | 13260 | 58 | 44 | 75.8621 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7097 | 93.6390 | 99.9886 | 31.7888 | 8700 | 591 | 8743 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4861 | 99.5813 | 99.3911 | 58.2577 | 8325 | 35 | 8325 | 51 | 50 | 98.0392 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.2713 | 96.9816 | 99.5957 | 64.0330 | 739 | 23 | 739 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3759 | 97.4713 | 99.2974 | 66.0032 | 424 | 11 | 424 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.1875 | 85.5072 | 100.0000 | 55.6391 | 59 | 10 | 59 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6109 | 99.2248 | 100.0000 | 62.0178 | 256 | 2 | 256 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.7421 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.5830 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.2537 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4788 | 99.0272 | 99.9346 | 76.0876 | 1527 | 15 | 1527 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3457 | 98.8069 | 99.8904 | 75.6735 | 911 | 11 | 911 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 80.5479 | 71 | 3 | 71 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9083 | 99.8168 | 100.0000 | 76.0545 | 545 | 1 | 545 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6697 | 99.3415 | 100.0000 | 79.4752 | 1056 | 7 | 1056 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5413 | 99.0868 | 100.0000 | 78.2783 | 651 | 6 | 651 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.0504 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 80.2674 | 369 | 0 | 369 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4735 | 88.5110 | 99.0255 | 55.9755 | 2134 | 277 | 2134 | 21 | 19 | 90.4762 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.1804 | 89.8785 | 98.9147 | 72.1262 | 666 | 75 | 638 | 7 | 5 | 71.4286 | |