PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57801-57850 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.5145 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 94.4444 | 13 | 1 | 13 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.7952 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.7965 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 94.6541 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.8785 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 94.7368 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2963 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.0991 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 96.0526 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 95.0000 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 96.2264 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.5752 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 96.2963 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 96.1832 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 96.3351 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 96.2406 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | * | 92.9353 | 92.3077 | 93.5714 | 92.9895 | 132 | 11 | 131 | 9 | 1 | 11.1111 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | het | 92.2299 | 93.5897 | 90.9091 | 94.3672 | 73 | 5 | 70 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.2086 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | homalt | 94.1176 | 94.1176 | 94.1176 | 92.7195 | 32 | 2 | 32 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | * | 95.7265 | 96.5517 | 94.9153 | 95.4334 | 56 | 2 | 56 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | het | 95.8904 | 100.0000 | 92.1053 | 95.6867 | 37 | 0 | 35 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7895 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D1_5 | * | * | 99.5137 | 99.1441 | 99.8861 | 56.7122 | 145489 | 1256 | 145542 | 166 | 109 | 65.6627 | |
| hfeng-pmm3 | INDEL | D1_5 | * | het | 99.5975 | 99.3183 | 99.8783 | 55.2507 | 86977 | 597 | 86982 | 106 | 53 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | * | hetalt | 96.9633 | 94.1240 | 99.9794 | 61.2573 | 9643 | 602 | 9686 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | * | homalt | 99.8825 | 99.8835 | 99.8815 | 58.1721 | 48869 | 57 | 48874 | 58 | 56 | 96.5517 | |