PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57401-57450 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1150 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 51.7241 | 42 | 1 | 42 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 48.1481 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.1566 | 89.4121 | 97.2284 | 51.4923 | 3513 | 416 | 3508 | 100 | 94 | 94.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9006 | 91.1550 | 92.6585 | 71.5146 | 876 | 85 | 833 | 66 | 61 | 92.4242 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8514 | 86.7287 | 99.9044 | 30.7514 | 2052 | 314 | 2090 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.9803 | 97.1761 | 94.8136 | 51.0706 | 585 | 17 | 585 | 32 | 31 | 96.8750 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.7213 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.5207 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6190 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.0502 | 96.8343 | 99.2971 | 55.9217 | 15539 | 508 | 15540 | 110 | 95 | 86.3636 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.2031 | 96.0157 | 98.4203 | 68.4990 | 5374 | 223 | 5358 | 86 | 74 | 86.0465 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9479 | 95.9924 | 99.9847 | 32.9893 | 6539 | 273 | 6556 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5197 | 99.6701 | 99.3697 | 56.7552 | 3626 | 12 | 3626 | 23 | 21 | 91.3043 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2064 | 95.5068 | 98.9676 | 53.3545 | 16877 | 794 | 16872 | 176 | 162 | 92.0455 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.5955 | 95.4157 | 97.8049 | 67.5959 | 5578 | 268 | 5525 | 124 | 115 | 92.7419 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7735 | 93.7833 | 99.9606 | 29.6505 | 7558 | 501 | 7606 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0206 | 99.3362 | 98.7071 | 54.3318 | 3741 | 25 | 3741 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.2643 | 90.4306 | 98.4375 | 74.6367 | 189 | 20 | 189 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 76.1616 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1408 | 82.0513 | 100.0000 | 61.4458 | 32 | 7 | 32 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8235 | 97.6744 | 100.0000 | 76.5363 | 42 | 1 | 42 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.5155 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.1651 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0477 | 98.3085 | 99.7982 | 63.4722 | 988 | 17 | 989 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7719 | 97.7431 | 99.8227 | 66.2275 | 563 | 13 | 563 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.1963 | 94.5455 | 100.0000 | 63.9456 | 52 | 3 | 53 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7326 | 99.7326 | 99.7326 | 58.2589 | 373 | 1 | 373 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5356 | 99.3048 | 99.7674 | 61.5385 | 857 | 6 | 858 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 64.5161 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.8750 | 93.9394 | 100.0000 | 63.6364 | 31 | 2 | 32 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 56.1224 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.5922 | 88.6792 | 96.8663 | 47.5010 | 2444 | 312 | 2442 | 79 | 77 | 97.4684 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.1080 | 90.6710 | 91.5493 | 68.5493 | 554 | 57 | 520 | 48 | 46 | 95.8333 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.4148 | 85.9485 | 99.9334 | 29.8926 | 1468 | 240 | 1500 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.9381 | 96.5675 | 93.3628 | 47.1345 | 422 | 15 | 422 | 30 | 30 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9360 | 95.1324 | 98.8093 | 46.5673 | 13114 | 671 | 13112 | 158 | 151 | 95.5696 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.9582 | 94.9341 | 97.0045 | 63.7624 | 3673 | 196 | 3627 | 112 | 107 | 95.5357 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.6815 | 93.6024 | 99.9702 | 26.8790 | 6657 | 455 | 6701 | 2 | 1 | 50.0000 | |