PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57351-57400 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 85.9155 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | * | 98.6531 | 98.7147 | 98.5915 | 87.1946 | 768 | 10 | 770 | 11 | 3 | 27.2727 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | het | 98.4769 | 98.8506 | 98.1061 | 87.1814 | 516 | 6 | 518 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.0711 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1903 | 98.7903 | 99.5935 | 85.8702 | 245 | 3 | 245 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m0_e0 | * | 96.8421 | 100.0000 | 93.8776 | 96.7463 | 46 | 0 | 46 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m0_e0 | het | 95.6522 | 100.0000 | 91.6667 | 96.7003 | 33 | 0 | 33 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4578 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.9710 | 98.8304 | 97.1264 | 94.1037 | 169 | 2 | 169 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | het | 97.3451 | 99.0991 | 95.6522 | 94.4923 | 110 | 1 | 110 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3214 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 92.5433 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | * | 98.1132 | 98.9130 | 97.3262 | 94.4329 | 182 | 2 | 182 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | het | 97.5610 | 99.1736 | 96.0000 | 94.6831 | 120 | 1 | 120 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8102 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 93.2262 | 59 | 1 | 59 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.1233 | 98.9189 | 97.3404 | 94.5285 | 183 | 2 | 183 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5806 | 99.1803 | 96.0317 | 94.7522 | 121 | 1 | 121 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 93.4004 | 59 | 1 | 59 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_siren | * | 99.3769 | 99.3199 | 99.4339 | 78.1455 | 3505 | 24 | 3513 | 20 | 5 | 25.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | het | 99.3647 | 99.4730 | 99.2567 | 77.5211 | 2265 | 12 | 2270 | 17 | 2 | 11.7647 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | hetalt | 95.6522 | 91.6667 | 100.0000 | 89.9478 | 77 | 7 | 77 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_siren | homalt | 99.6576 | 99.5719 | 99.7434 | 77.6311 | 1163 | 5 | 1166 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | * | 99.6820 | 99.4560 | 99.9091 | 93.9277 | 1097 | 6 | 1099 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | het | 99.6380 | 99.4220 | 99.8551 | 93.8431 | 688 | 4 | 689 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.3425 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8242 | 359 | 0 | 359 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9892 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 45.7143 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | * | * | 98.0738 | 96.8879 | 99.2891 | 51.0206 | 25280 | 812 | 25279 | 181 | 162 | 89.5028 | |
| hfeng-pmm3 | INDEL | D6_15 | * | het | 98.2130 | 97.5673 | 98.8673 | 58.6531 | 11310 | 282 | 11260 | 129 | 115 | 89.1473 | |
| hfeng-pmm3 | INDEL | D6_15 | * | hetalt | 96.8203 | 93.8708 | 99.9612 | 33.0763 | 7673 | 501 | 7722 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | * | homalt | 99.3845 | 99.5416 | 99.2279 | 50.7795 | 6297 | 29 | 6297 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002complexvar | * | 97.0065 | 94.7378 | 99.3864 | 56.7243 | 5023 | 279 | 5021 | 31 | 24 | 77.4194 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002complexvar | het | 95.8678 | 92.7244 | 99.2318 | 57.2218 | 2893 | 227 | 2842 | 22 | 17 | 77.2727 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002complexvar | hetalt | 97.4277 | 95.1629 | 99.8030 | 47.8149 | 964 | 49 | 1013 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002complexvar | homalt | 99.5730 | 99.7434 | 99.4032 | 61.3382 | 1166 | 3 | 1166 | 7 | 6 | 85.7143 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | * | 95.1894 | 92.4704 | 98.0731 | 32.6928 | 8351 | 680 | 8347 | 164 | 158 | 96.3415 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | het | 81.8478 | 78.8551 | 85.0765 | 66.7091 | 675 | 181 | 667 | 117 | 113 | 96.5812 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | hetalt | 96.8362 | 93.8781 | 99.9869 | 24.0528 | 7652 | 499 | 7656 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | homalt | 51.0638 | 100.0000 | 34.2857 | 66.3462 | 24 | 0 | 24 | 46 | 45 | 97.8261 | |
| hfeng-pmm3 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8900 | 1 | 0 | 1 | 0 | 0 | ||