PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57301-57350 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4287 | 98.9934 | 99.8677 | 43.4696 | 2262 | 23 | 2265 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7831 | 99.5671 | 100.0000 | 29.1217 | 460 | 2 | 460 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.4829 | 1330 | 0 | 1330 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1507 | 90.6667 | 95.7746 | 60.9890 | 68 | 7 | 68 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 85.3933 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.4783 | 87.7551 | 100.0000 | 29.5082 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 53.1250 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | * | 98.9018 | 99.0730 | 98.7313 | 82.4245 | 855 | 8 | 856 | 11 | 2 | 18.1818 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | het | 98.7377 | 99.1540 | 98.3250 | 82.6403 | 586 | 5 | 587 | 10 | 1 | 10.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.3702 | 12 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.6124 | 99.6124 | 99.6124 | 80.3503 | 257 | 1 | 257 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | * | 99.0792 | 98.9177 | 99.2412 | 80.6907 | 1828 | 20 | 1831 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | het | 99.0096 | 99.0902 | 98.9292 | 80.5480 | 1198 | 11 | 1201 | 13 | 2 | 15.3846 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.3820 | 89.3617 | 100.0000 | 89.9761 | 42 | 5 | 42 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5766 | 99.3243 | 99.8302 | 79.6546 | 588 | 4 | 588 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | * | 99.0853 | 98.9034 | 99.2678 | 81.4098 | 1894 | 21 | 1898 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | het | 99.0064 | 99.0446 | 98.9683 | 81.1940 | 1244 | 12 | 1247 | 13 | 2 | 15.3846 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 90.2655 | 43 | 5 | 44 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5898 | 99.3453 | 99.8355 | 80.5937 | 607 | 4 | 607 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | * | 99.0966 | 98.9170 | 99.2769 | 81.5232 | 1918 | 21 | 1922 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | het | 99.0158 | 99.0536 | 98.9780 | 81.3490 | 1256 | 12 | 1259 | 13 | 2 | 15.3846 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.8454 | 90.1961 | 100.0000 | 89.8925 | 46 | 5 | 47 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5958 | 99.3548 | 99.8379 | 80.6765 | 616 | 4 | 616 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | * | 98.5962 | 98.9919 | 98.2036 | 86.2287 | 491 | 5 | 492 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | het | 98.2742 | 98.8406 | 97.7143 | 86.4341 | 341 | 4 | 342 | 8 | 1 | 12.5000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5410 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 99.3243 | 99.3243 | 99.3243 | 84.1880 | 147 | 1 | 147 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.9456 | 99.0809 | 98.8106 | 83.8505 | 1078 | 10 | 1080 | 13 | 3 | 23.0769 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | het | 98.6982 | 99.0358 | 98.3629 | 83.8617 | 719 | 7 | 721 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.3125 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.5696 | 99.4269 | 99.7126 | 82.3350 | 347 | 2 | 347 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.9520 | 99.0376 | 98.8666 | 84.6288 | 1132 | 11 | 1134 | 13 | 3 | 23.0769 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | het | 98.7626 | 99.0838 | 98.4436 | 84.5181 | 757 | 7 | 759 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.6229 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.5873 | 99.4505 | 99.7245 | 83.3867 | 362 | 2 | 362 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.9647 | 99.0493 | 98.8803 | 84.7056 | 1146 | 11 | 1148 | 13 | 3 | 23.0769 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | het | 98.7722 | 99.0909 | 98.4556 | 84.6291 | 763 | 7 | 765 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.7377 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.5962 | 99.4624 | 99.7305 | 83.3707 | 370 | 2 | 370 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | * | 98.4604 | 99.3080 | 97.6271 | 89.5723 | 287 | 2 | 288 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | het | 98.0464 | 99.0099 | 97.1014 | 89.8080 | 200 | 2 | 201 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 87.8187 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | * | 98.6799 | 98.8842 | 98.4765 | 86.4946 | 709 | 8 | 711 | 11 | 3 | 27.2727 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | het | 98.4563 | 98.9627 | 97.9550 | 86.5733 | 477 | 5 | 479 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0588 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 84.8667 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.6930 | 98.8204 | 98.5658 | 87.1803 | 754 | 9 | 756 | 11 | 3 | 27.2727 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.5517 | 99.0272 | 98.0806 | 87.1263 | 509 | 5 | 511 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4138 | 6 | 1 | 6 | 0 | 0 | ||