PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57001-57050 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | ti | map_l150_m1_e0 | homalt | 99.7816 | 99.7680 | 99.7952 | 70.9268 | 7310 | 17 | 7310 | 15 | 6 | 40.0000 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e0 | * | 99.5024 | 99.4394 | 99.5655 | 75.5202 | 20397 | 115 | 20393 | 89 | 14 | 15.7303 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e0 | het | 99.3316 | 99.2392 | 99.4243 | 76.7413 | 12783 | 98 | 12779 | 74 | 8 | 10.8108 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l150_m2_e0 | homalt | 99.7899 | 99.7768 | 99.8030 | 73.1277 | 7599 | 17 | 7599 | 15 | 6 | 40.0000 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e1 | * | 99.5026 | 99.4402 | 99.5651 | 75.5918 | 20607 | 116 | 20603 | 90 | 14 | 15.5556 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e1 | het | 99.3308 | 99.2393 | 99.4225 | 76.8259 | 12916 | 99 | 12912 | 75 | 8 | 10.6667 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l150_m2_e1 | homalt | 99.7920 | 99.7790 | 99.8050 | 73.1684 | 7676 | 17 | 7676 | 15 | 6 | 40.0000 | |
| hfeng-pmm3 | SNP | ti | map_l250_m0_e0 | * | 98.5053 | 98.6131 | 98.3977 | 92.9205 | 1351 | 19 | 1351 | 22 | 3 | 13.6364 | |
| hfeng-pmm3 | SNP | ti | map_l250_m0_e0 | het | 98.2343 | 98.2869 | 98.1818 | 93.2251 | 918 | 16 | 918 | 17 | 1 | 5.8824 | |
| hfeng-pmm3 | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | ti | map_l250_m0_e0 | homalt | 99.0847 | 99.3119 | 98.8584 | 92.1463 | 433 | 3 | 433 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | SNP | ti | map_l250_m1_e0 | * | 99.0936 | 99.0828 | 99.1044 | 88.3618 | 4537 | 42 | 4537 | 41 | 5 | 12.1951 | |
| hfeng-pmm3 | SNP | ti | map_l250_m1_e0 | het | 98.8707 | 98.8208 | 98.9207 | 89.0542 | 2933 | 35 | 2933 | 32 | 3 | 9.3750 | |
| hfeng-pmm3 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l250_m1_e0 | homalt | 99.5025 | 99.5644 | 99.4406 | 86.8266 | 1600 | 7 | 1600 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e0 | * | 99.1712 | 99.1613 | 99.1811 | 88.8122 | 4966 | 42 | 4966 | 41 | 5 | 12.1951 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e0 | het | 98.9700 | 98.9244 | 99.0157 | 89.3221 | 3219 | 35 | 3219 | 32 | 3 | 9.3750 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l250_m2_e0 | homalt | 99.5429 | 99.5998 | 99.4860 | 87.7295 | 1742 | 7 | 1742 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e1 | * | 99.1724 | 99.1529 | 99.1920 | 88.8826 | 5033 | 43 | 5033 | 41 | 5 | 12.1951 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e1 | het | 98.9688 | 98.9088 | 99.0288 | 89.4045 | 3263 | 36 | 3263 | 32 | 3 | 9.3750 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l250_m2_e1 | homalt | 99.5488 | 99.6050 | 99.4927 | 87.7689 | 1765 | 7 | 1765 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | SNP | ti | map_siren | * | 99.7701 | 99.6881 | 99.8523 | 52.8057 | 100042 | 313 | 100027 | 148 | 25 | 16.8919 | |
| hfeng-pmm3 | SNP | ti | map_siren | het | 99.6838 | 99.5672 | 99.8007 | 53.2950 | 62112 | 270 | 62103 | 124 | 11 | 8.8710 | |
| hfeng-pmm3 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 72.8155 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_siren | homalt | 99.9129 | 99.8892 | 99.9367 | 51.9265 | 37874 | 42 | 37868 | 24 | 14 | 58.3333 | |
| hfeng-pmm3 | SNP | ti | segdup | * | 99.7137 | 99.8311 | 99.5965 | 88.9183 | 19504 | 33 | 19502 | 79 | 3 | 3.7975 | |
| hfeng-pmm3 | SNP | ti | segdup | het | 99.5602 | 99.7506 | 99.3705 | 89.3230 | 12000 | 30 | 11998 | 76 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9946 | 98.7097 | 99.2811 | 82.7868 | 1377 | 18 | 1381 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.7593 | 98.1481 | 99.3781 | 83.5851 | 795 | 15 | 799 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.2308 | 42 | 3 | 42 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5392 | 100.0000 | 99.0826 | 80.4869 | 540 | 0 | 540 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.5533 | 98.7097 | 98.3974 | 87.4598 | 306 | 4 | 307 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4320 | 97.9167 | 98.9529 | 88.7448 | 188 | 4 | 189 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8763 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 83.1412 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.9155 | 98.7952 | 99.0361 | 84.0996 | 820 | 10 | 822 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4509 | 97.9424 | 98.9648 | 85.0418 | 476 | 10 | 478 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7660 | 17 | 0 | 17 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.2073 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8315 | 98.5998 | 99.0643 | 85.4245 | 845 | 12 | 847 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.3826 | 97.7867 | 98.9858 | 86.3018 | 486 | 11 | 488 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 93.3824 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 82.7569 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8490 | 98.6207 | 99.0783 | 85.5790 | 858 | 12 | 860 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.4178 | 97.8346 | 99.0079 | 86.3821 | 497 | 11 | 499 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 93.5018 | 18 | 1 | 18 | 0 | 0 | ||