PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
56951-57000 / 86044 show all
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7776
99.5561
100.0000
29.2802
246711246600
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
100.0000
99.8600
29.0467
14270142721
50.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_51to200*
93.3333
87.5000
100.0000
95.5128
71700
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_51to200het
90.9091
83.3333
100.0000
94.7917
51500
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.6667
20200
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3SNPtimap_l100_m0_e0*
99.5150
99.4304
99.5997
67.5390
21647124216448713
14.9425
hfeng-pmm3SNPtimap_l100_m0_e0het
99.3735
99.2634
99.4838
69.6444
1388010313877727
9.7222
hfeng-pmm3SNPtimap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
74.5455
1401400
hfeng-pmm3SNPtimap_l100_m0_e0homalt
99.7684
99.7299
99.8069
62.9000
7753217753156
40.0000
hfeng-pmm3SNPtimap_l100_m1_e0*
99.6742
99.5848
99.7638
62.8483
477321994772511321
18.5841
hfeng-pmm3SNPtimap_l100_m1_e0het
99.5602
99.4256
99.6952
64.3351
2977017229763919
9.8901
hfeng-pmm3SNPtimap_l100_m1_e0hetalt
100.0000
100.0000
100.0000
73.8739
2902900
hfeng-pmm3SNPtimap_l100_m1_e0homalt
99.8636
99.8497
99.8775
60.0521
1793327179332212
54.5455
hfeng-pmm3SNPtimap_l100_m2_e0*
99.6760
99.5874
99.7647
64.5930
487592024875211521
18.2609
hfeng-pmm3SNPtimap_l100_m2_e0het
99.5618
99.4285
99.6954
65.7218
3044717530440939
9.6774
hfeng-pmm3SNPtimap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
75.8065
3003000
hfeng-pmm3SNPtimap_l100_m2_e0homalt
99.8662
99.8525
99.8798
62.5049
1828227182822212
54.5455
hfeng-pmm3SNPtimap_l100_m2_e1*
99.6774
99.5898
99.7651
64.5884
492822034927511621
18.1034
hfeng-pmm3SNPtimap_l100_m2_e1het
99.5633
99.4315
99.6955
65.7255
3078417630777949
9.5745
hfeng-pmm3SNPtimap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
75.2000
3103100
hfeng-pmm3SNPtimap_l100_m2_e1homalt
99.8675
99.8540
99.8810
62.4833
1846727184672212
54.5455
hfeng-pmm3SNPtimap_l125_m0_e0*
99.3611
99.3183
99.4039
74.1190
1267587126737611
14.4737
hfeng-pmm3SNPtimap_l125_m0_e0het
99.1947
99.1407
99.2487
75.9543
8192718190626
9.6774
hfeng-pmm3SNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
80.0000
80800
hfeng-pmm3SNPtimap_l125_m0_e0homalt
99.6659
99.6437
99.6881
69.8765
4475164475145
35.7143
hfeng-pmm3SNPtimap_l125_m1_e0*
99.5837
99.4989
99.6687
69.3283
29188147291849716
16.4948
hfeng-pmm3SNPtimap_l125_m1_e0het
99.4436
99.3211
99.5663
71.0299
1814212418138798
10.1266
hfeng-pmm3SNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
71.4286
2402400
hfeng-pmm3SNPtimap_l125_m1_e0homalt
99.8144
99.7918
99.8370
66.0308
110222311022188
44.4444
hfeng-pmm3SNPtimap_l125_m2_e0*
99.5898
99.5076
99.6722
70.9814
30109149301059916
16.1616
hfeng-pmm3SNPtimap_l125_m2_e0het
99.4510
99.3325
99.5698
72.2770
1875012618746818
9.8765
hfeng-pmm3SNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
76.0000
2402400
hfeng-pmm3SNPtimap_l125_m2_e0homalt
99.8195
99.7975
99.8415
68.5286
113352311335188
44.4444
hfeng-pmm3SNPtimap_l125_m2_e1*
99.5907
99.5093
99.6723
71.0190
304191503041510016
16.0000
hfeng-pmm3SNPtimap_l125_m2_e1het
99.4518
99.3346
99.5693
72.3168
1896012718956828
9.7561
hfeng-pmm3SNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
76.0000
2402400
hfeng-pmm3SNPtimap_l125_m2_e1homalt
99.8210
99.7993
99.8428
68.5547
114352311435188
44.4444
hfeng-pmm3SNPtimap_l150_m0_e0*
99.2301
99.2113
99.2490
79.5379
7799627797596
10.1695
hfeng-pmm3SNPtimap_l150_m0_e0het
99.0183
98.9602
99.0764
81.1323
5044535042472
4.2553
hfeng-pmm3SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
hfeng-pmm3SNPtimap_l150_m0_e0homalt
99.6199
99.6740
99.5658
75.7331
275292752124
33.3333
hfeng-pmm3SNPtimap_l150_m1_e0*
99.4898
99.4217
99.5579
74.0428
19598114195948714
16.0920
hfeng-pmm3SNPtimap_l150_m1_e0het
99.3161
99.2158
99.4166
75.5923
122739712269728
11.1111
hfeng-pmm3SNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
76.5625
1501500