PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56751-56800 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.2459 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | homalt | 99.4597 | 99.4597 | 99.4597 | 72.3171 | 2209 | 12 | 2209 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | map_l125_m1_e0 | * | 99.5034 | 99.4568 | 99.5500 | 69.7161 | 15929 | 87 | 15927 | 72 | 10 | 13.8889 | |
| hfeng-pmm3 | SNP | tv | map_l125_m1_e0 | het | 99.3576 | 99.2988 | 99.4165 | 70.9308 | 10055 | 71 | 10053 | 59 | 5 | 8.4746 | |
| hfeng-pmm3 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m1_e0 | homalt | 99.7525 | 99.7270 | 99.7780 | 67.2958 | 5844 | 16 | 5844 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | * | 99.5176 | 99.4724 | 99.5629 | 71.4177 | 16402 | 87 | 16400 | 72 | 10 | 13.8889 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | het | 99.3771 | 99.3201 | 99.4342 | 72.2814 | 10371 | 71 | 10369 | 59 | 5 | 8.4746 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | homalt | 99.7590 | 99.7341 | 99.7838 | 69.7058 | 6001 | 16 | 6001 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | * | 99.5225 | 99.4777 | 99.5673 | 71.4702 | 16570 | 87 | 16568 | 72 | 10 | 13.8889 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | het | 99.3837 | 99.3272 | 99.4402 | 72.3386 | 10482 | 71 | 10480 | 59 | 5 | 8.4746 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | homalt | 99.7612 | 99.7366 | 99.7859 | 69.7479 | 6058 | 16 | 6058 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | * | 99.0651 | 99.0177 | 99.1125 | 80.0536 | 4133 | 41 | 4132 | 37 | 3 | 8.1081 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | het | 98.8723 | 98.6986 | 99.0466 | 80.7883 | 2806 | 37 | 2805 | 27 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | homalt | 99.4741 | 99.6988 | 99.2504 | 78.1634 | 1324 | 4 | 1324 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | map_l150_m1_e0 | * | 99.3718 | 99.3127 | 99.4310 | 74.1360 | 10837 | 75 | 10835 | 62 | 9 | 14.5161 | |
| hfeng-pmm3 | SNP | tv | map_l150_m1_e0 | het | 99.2002 | 99.1218 | 99.2788 | 75.3081 | 6885 | 61 | 6883 | 50 | 5 | 10.0000 | |
| hfeng-pmm3 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l150_m1_e0 | homalt | 99.6705 | 99.6452 | 99.6957 | 71.7215 | 3932 | 14 | 3932 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | * | 99.3876 | 99.3395 | 99.4357 | 75.5855 | 11280 | 75 | 11278 | 64 | 9 | 14.0625 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | het | 99.2203 | 99.1589 | 99.2819 | 76.4022 | 7191 | 61 | 7189 | 52 | 5 | 9.6154 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | homalt | 99.6815 | 99.6571 | 99.7060 | 73.9183 | 4069 | 14 | 4069 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | * | 99.3954 | 99.3479 | 99.4429 | 75.5927 | 11427 | 75 | 11425 | 64 | 9 | 14.0625 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | het | 99.2305 | 99.1698 | 99.2913 | 76.4144 | 7287 | 61 | 7285 | 52 | 5 | 9.6154 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | homalt | 99.6855 | 99.6613 | 99.7096 | 73.9141 | 4120 | 14 | 4120 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.7817 | 749 | 16 | 749 | 16 | 3 | 18.7500 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | het | 97.8089 | 97.5524 | 98.0668 | 92.4426 | 558 | 14 | 558 | 11 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | homalt | 98.2005 | 98.9637 | 97.4490 | 93.5569 | 191 | 2 | 191 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | * | 98.7121 | 98.4511 | 98.9746 | 87.8091 | 2606 | 41 | 2606 | 27 | 4 | 14.8148 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | het | 98.3966 | 97.8735 | 98.9253 | 88.0822 | 1749 | 38 | 1749 | 19 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4426 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | homalt | 99.3593 | 99.6495 | 99.0708 | 87.1531 | 853 | 3 | 853 | 8 | 4 | 50.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | * | 98.7483 | 98.5427 | 98.9547 | 88.3900 | 2840 | 42 | 2840 | 30 | 4 | 13.3333 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | het | 98.4472 | 98.0412 | 98.8565 | 88.5422 | 1902 | 38 | 1902 | 22 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | homalt | 99.3610 | 99.5731 | 99.1498 | 88.0265 | 933 | 4 | 933 | 8 | 4 | 50.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | * | 98.7629 | 98.5597 | 98.9669 | 88.4625 | 2874 | 42 | 2874 | 30 | 4 | 13.3333 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | het | 98.4670 | 98.0662 | 98.8712 | 88.6090 | 1927 | 38 | 1927 | 22 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | homalt | 99.3671 | 99.5772 | 99.1579 | 88.1116 | 942 | 4 | 942 | 8 | 4 | 50.0000 | |
| hfeng-pmm3 | SNP | tv | map_siren | * | 99.7604 | 99.7104 | 99.8104 | 56.7354 | 45797 | 133 | 45789 | 87 | 15 | 17.2414 | |
| hfeng-pmm3 | SNP | tv | map_siren | het | 99.6834 | 99.6155 | 99.7514 | 57.1444 | 28499 | 110 | 28494 | 71 | 7 | 9.8592 | |
| hfeng-pmm3 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.0779 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_siren | homalt | 99.8898 | 99.8724 | 99.9071 | 55.8869 | 17218 | 22 | 17215 | 16 | 8 | 50.0000 | |