PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56701-56750 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8394 | 99.6976 | 99.9816 | 59.7625 | 10878 | 33 | 10875 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7572 | 99.5298 | 99.9857 | 59.9128 | 6986 | 33 | 6983 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9871 | 100.0000 | 99.9743 | 59.4747 | 3887 | 0 | 3887 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4812 | 99.0741 | 99.8917 | 37.3686 | 7383 | 69 | 7380 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2056 | 98.5498 | 99.8702 | 37.4713 | 4621 | 68 | 4618 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9456 | 99.9637 | 99.9275 | 37.1096 | 2757 | 1 | 2757 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.5556 | 69.0476 | 96.6667 | 91.1504 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9661 | 63.8889 | 100.0000 | 90.5738 | 23 | 13 | 23 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.6316 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5487 | 99.1014 | 100.0000 | 35.3153 | 3419 | 31 | 3416 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3172 | 98.6436 | 100.0000 | 35.7535 | 2109 | 29 | 2106 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9618 | 99.9237 | 100.0000 | 34.5327 | 1310 | 1 | 1310 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.2759 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | map_l100_m0_e0 | * | 99.4268 | 99.3775 | 99.4762 | 69.0933 | 11015 | 69 | 11014 | 58 | 8 | 13.7931 | |
| hfeng-pmm3 | SNP | tv | map_l100_m0_e0 | het | 99.3072 | 99.2523 | 99.3623 | 70.7621 | 7168 | 54 | 7167 | 46 | 4 | 8.6957 | |
| hfeng-pmm3 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7468 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l100_m0_e0 | homalt | 99.6488 | 99.6100 | 99.6877 | 65.3002 | 3831 | 15 | 3831 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | map_l100_m1_e0 | * | 99.6386 | 99.5919 | 99.6854 | 64.5700 | 24401 | 100 | 24397 | 77 | 10 | 12.9870 | |
| hfeng-pmm3 | SNP | tv | map_l100_m1_e0 | het | 99.5262 | 99.4681 | 99.5843 | 65.6944 | 15335 | 82 | 15331 | 64 | 5 | 7.8125 | |
| hfeng-pmm3 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7045 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l100_m1_e0 | homalt | 99.8285 | 99.8010 | 99.8562 | 62.3809 | 9025 | 18 | 9025 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | * | 99.6443 | 99.6005 | 99.6881 | 66.3015 | 24933 | 100 | 24929 | 78 | 10 | 12.8205 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | het | 99.5338 | 99.4803 | 99.5875 | 67.0941 | 15695 | 82 | 15691 | 65 | 5 | 7.6923 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 42 | 0 | 42 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | homalt | 99.8317 | 99.8046 | 99.8588 | 64.7570 | 9196 | 18 | 9196 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e1 | * | 99.6458 | 99.6045 | 99.6872 | 66.3290 | 25183 | 100 | 25179 | 79 | 10 | 12.6582 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e1 | het | 99.5354 | 99.4855 | 99.5854 | 67.1367 | 15856 | 82 | 15852 | 66 | 5 | 7.5758 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.1726 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l100_m2_e1 | homalt | 99.8333 | 99.8065 | 99.8602 | 64.7574 | 9284 | 18 | 9284 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | * | 99.1700 | 99.1102 | 99.2298 | 75.2152 | 6572 | 59 | 6571 | 51 | 7 | 13.7255 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | het | 99.0220 | 98.9321 | 99.1120 | 76.4302 | 4354 | 47 | 4353 | 39 | 3 | 7.6923 | |